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(?) Enter a search word or phrase (left box), optionally select an appropriate field (middle), and hit the search button or press enter. This search engine is NOT case sensitive.

Use wild characters " ? " and " * " for efficient search:
  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
WormClustClustering- and enrichment-based association of genes with the metabolic network
Metabolite Overview
Abbreviation ..................................................... : adp
Name ..................................................... : ADP, etc.Adenosine 5'-diphosphate
Model ID ..................................................... : C00008
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : C00008
Formula ..................................................... : C10H12N5O10P2
Charge ..................................................... : -3
Localization ..................................................... : Mitochondria, Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : adp
Other associations ..................................................... : See reaction table below (168 reactions in total)

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space
.....................................................
:   Go to map
Comments
ERROR
Reactions
ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.
Pathway
Not applicable
[c] : (2.0) gtpName: GTP
Formula: C10H12N5O14P3
Charge: -4




click to see details on this item
+ (0.324) atpName: ATP
Formula: C10H12N5O13P3
Charge: -4




click to see details on this item
+ (2.324) h2oName: H2O
Formula: H2O
Charge: 0




click to see details on this item
+ (0.072072) alatrnaName: L-Alanyl-tRNA(Ala)
Formula: C3H7NO2R
Charge: 1




click to see details on this item
+ (0.048116) argtrnaName: L-Arginyl-tRNA(Arg)
Formula: C6H15N4O2R
Charge: 2




click to see details on this item
+ (0.033015) asntrnaName: L-Asparaginyl-tRNA(Asn)
Formula: C4H8N2O3R
Charge: 1




click to see details on this item
+ (0.049284) asptrnaName: L-Aspartyl-tRNA(Asp)
Formula: C4H6NO4R
Charge: 0




click to see details on this item
+ (0.027047) cystrnaName: L-Cysteinyl-tRNA(Cys)
Formula: C3H7NO2SR
Charge: 1




click to see details on this item
+ (0.049537) glutrnaName: L-Glutamyl-tRNA(Glu)
Formula: C5H8NO4R
Charge: 0




click to see details on this item
+ (0.046288) glntrnaName: L-Glutaminyl-tRNA(Gln)
Formula: C5H10N2O3R
Charge: 1




click to see details on this item
+ (0.195952) glytrnaName: Glycyl-tRNA(Gly)
Formula: C2H5NO2R
Charge: 1




click to see details on this item
+ (0.014203) histrnaName: L-Histidyl-tRNA(His)
Formula: C6H9N3O2R
Charge: 1




click to see details on this item
+ (0.027694) iletrnaName: L-Isoleucyl-tRNA(Ile)
Formula: C6H13NO2R
Charge: 1




click to see details on this item
+ (0.033232) leutrnaName: L-Leucyl-tRNA(Leu)
Formula: C6H13NO2R
Charge: 1




click to see details on this item
+ (0.036365) lystrnaName: L-Lysine-tRNA (Lys)
Formula: C6H15N2O2R
Charge: 2




click to see details on this item
+ (0.017249) mettrnaName: L-Methionyl-tRNA (Met)
Formula: C5H11NO2SR
Charge: 1




click to see details on this item
+ (0.017276) phetrnaName: L-Phenylalanyl-tRNA(Phe)
Formula: C9H11NO2R
Charge: 1




click to see details on this item
+ (0.167533) protrnaName: L-Prolyl-tRNA(Pro)
Formula: C5H9NO2R
Charge: 1




click to see details on this item
+ (0.051072) sertrnaName: L-Seryl-tRNA(Ser)
Formula: C3H7NO3R
Charge: 1




click to see details on this item
+ (0.042924) thrtrnaName: L-Threonyl-tRNA(Thr)
Formula: C4H9NO3R
Charge: 1




click to see details on this item
+ (0.004785) trptrnaName: L-Tryptophanyl-tRNA(Trp)
Formula: C11H12N2O2R
Charge: 1




click to see details on this item
+ (0.022921) tyrtrnaName: L-Tyrosyl-tRNA(Tyr)
Formula: C9H11NO3R
Charge: 1




click to see details on this item
+ (0.043435) valtrnaName: L-Valyl-tRNA(Val)
Formula: C5H11NO2R
Charge: 1




click to see details on this item
(0.921682) pcollg_restName: Procollagen (unmodified portion)
Formula: X
Charge: 0




click to see details on this item
+ (0.006239) pcollglysName: Procollagen L-lysine (to be modified)
Formula: XH
Charge: 1




click to see details on this item
+ (0.072079) pcollgproName: Procollagen L-proline (to be modified)
Formula: XH
Charge: 0




click to see details on this item
+ (2.0) gdpName: GDP
Formula: C10H12N5O11P2
Charge: -3




click to see details on this item
+ (0.324) adpName: ADP
Formula: C10H12N5O10P2
Charge: -3




click to see details on this item
+ (3.324) hName: H+
Formula: H
Charge: 1




click to see details on this item
+ (2.324) piName: Phosphate
Formula: HO4P
Charge: -2




click to see details on this item
+ (0.072072) trnaalaName: tRNA(Ala)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.048116) trnaargName: tRNA(Arg)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.033015) trnaasnName: tRNA(Asn)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.049284) trnaaspName: tRNA(Asp)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.027047) trnacysName: tRNA(Cys)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.049537) trnagluName: tRNA (Glu)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.046288) trnaglnName: tRNA(Gln)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.195952) trnaglyName: tRNA(Gly)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.014203) trnahisName: tRNA(His)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.027694) trnaileName: tRNA(Ile)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.033232) trnaleuName: tRNA(Leu)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.036365) trnalysName: tRNA(Lys)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.017249) trnametName: tRNA(Met)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.017276) trnapheName: tRNA(Phe)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.167533) trnaproName: tRNA(Pro)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.051072) trnaserName: tRNA(Ser)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.042924) trnathrName: tRNA(Thr)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.004785) trnatrpName: tRNA(Trp)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.022921) trnatyrName: tRNA(Tyr)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.043435) trnavalName: tRNA(Val)
Formula: ROH
Charge: 0




click to see details on this item
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
[m] : (2.0) gtpName: GTP
Formula: C10H12N5O14P3
Charge: -4




click to see details on this item
+ (0.324) atpName: ATP
Formula: C10H12N5O13P3
Charge: -4




click to see details on this item
+ (2.324) h2oName: H2O
Formula: H2O
Charge: 0




click to see details on this item
+ (0.111867) alatrnaName: L-Alanyl-tRNA(Ala)
Formula: C3H7NO2R
Charge: 1




click to see details on this item
+ (0.048846) argtrnaName: L-Arginyl-tRNA(Arg)
Formula: C6H15N4O2R
Charge: 2




click to see details on this item
+ (0.035405) asntrnaName: L-Asparaginyl-tRNA(Asn)
Formula: C4H8N2O3R
Charge: 1




click to see details on this item
+ (0.064946) asptrnaName: L-Aspartyl-tRNA(Asp)
Formula: C4H6NO4R
Charge: 0




click to see details on this item
+ (0.008665) cystrnaName: L-Cysteinyl-tRNA(Cys)
Formula: C3H7NO2SR
Charge: 1




click to see details on this item
+ (0.067386) glutrnaName: L-Glutamyl-tRNA(Glu)
Formula: C5H8NO4R
Charge: 0




click to see details on this item
+ (0.037694) glntrnaName: L-Glutaminyl-tRNA(Gln)
Formula: C5H10N2O3R
Charge: 1




click to see details on this item
+ (0.094618) glytrnaName: Glycyl-tRNA(Gly)
Formula: C2H5NO2R
Charge: 1




click to see details on this item
+ (0.01782) histrnaName: L-Histidyl-tRNA(His)
Formula: C6H9N3O2R
Charge: 1




click to see details on this item
+ (0.053231) iletrnaName: L-Isoleucyl-tRNA(Ile)
Formula: C6H13NO2R
Charge: 1




click to see details on this item
+ (0.082051) leutrnaName: L-Leucyl-tRNA(Leu)
Formula: C6H13NO2R
Charge: 1




click to see details on this item
+ (0.071622) lystrnaName: L-Lysine-tRNA (Lys)
Formula: C6H15N2O2R
Charge: 2




click to see details on this item
+ (0.020458) mettrnaName: L-Methionyl-tRNA (Met)
Formula: C5H11NO2SR
Charge: 1




click to see details on this item
+ (0.035592) phetrnaName: L-Phenylalanyl-tRNA(Phe)
Formula: C9H11NO2R
Charge: 1




click to see details on this item
+ (0.043238) protrnaName: L-Prolyl-tRNA(Pro)
Formula: C5H9NO2R
Charge: 1




click to see details on this item
+ (0.045815) sertrnaName: L-Seryl-tRNA(Ser)
Formula: C3H7NO3R
Charge: 1




click to see details on this item
+ (0.049868) thrtrnaName: L-Threonyl-tRNA(Thr)
Formula: C4H9NO3R
Charge: 1




click to see details on this item
+ (0.008944) trptrnaName: L-Tryptophanyl-tRNA(Trp)
Formula: C11H12N2O2R
Charge: 1




click to see details on this item
+ (0.026832) tyrtrnaName: L-Tyrosyl-tRNA(Tyr)
Formula: C9H11NO3R
Charge: 1




click to see details on this item
+ (0.075105) valtrnaName: L-Valyl-tRNA(Val)
Formula: C5H11NO2R
Charge: 1




click to see details on this item
prot_mitoName: Mitochondrial protein
Formula: X
Charge: 0




click to see details on this item
+ (2.0) gdpName: GDP
Formula: C10H12N5O11P2
Charge: -3




click to see details on this item
+ (0.324) adpName: ADP
Formula: C10H12N5O10P2
Charge: -3




click to see details on this item
+ (3.324) hName: H+
Formula: H
Charge: 1




click to see details on this item
+ (2.324) piName: Phosphate
Formula: HO4P
Charge: -2




click to see details on this item
+ (0.111867) trnaalaName: tRNA(Ala)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.048846) trnaargName: tRNA(Arg)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.035405) trnaasnName: tRNA(Asn)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.064946) trnaaspName: tRNA(Asp)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.008665) trnacysName: tRNA(Cys)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.067386) trnagluName: tRNA (Glu)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.037694) trnaglnName: tRNA(Gln)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.094618) trnaglyName: tRNA(Gly)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.01782) trnahisName: tRNA(His)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.053231) trnaileName: tRNA(Ile)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.082051) trnaleuName: tRNA(Leu)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.071622) trnalysName: tRNA(Lys)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.020458) trnametName: tRNA(Met)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.035592) trnapheName: tRNA(Phe)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.043238) trnaproName: tRNA(Pro)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.045815) trnaserName: tRNA(Ser)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.049868) trnathrName: tRNA(Thr)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.008944) trnatrpName: tRNA(Trp)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.026832) trnatyrName: tRNA(Tyr)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.075105) trnavalName: tRNA(Val)
Formula: ROH
Charge: 0




click to see details on this item
Not applicable
Not applicable
[c] : (2.0) gtpName: GTP
Formula: C10H12N5O14P3
Charge: -4




click to see details on this item
+ (0.324) atpName: ATP
Formula: C10H12N5O13P3
Charge: -4




click to see details on this item
+ (2.324) h2oName: H2O
Formula: H2O
Charge: 0




click to see details on this item
+ (0.12769) alatrnaName: L-Alanyl-tRNA(Ala)
Formula: C3H7NO2R
Charge: 1




click to see details on this item
+ (0.042387) argtrnaName: L-Arginyl-tRNA(Arg)
Formula: C6H15N4O2R
Charge: 2




click to see details on this item
+ (0.025739) asntrnaName: L-Asparaginyl-tRNA(Asn)
Formula: C4H8N2O3R
Charge: 1




click to see details on this item
+ (0.084822) asptrnaName: L-Aspartyl-tRNA(Asp)
Formula: C4H6NO4R
Charge: 0




click to see details on this item
+ (0.000208) cystrnaName: L-Cysteinyl-tRNA(Cys)
Formula: C3H7NO2SR
Charge: 1




click to see details on this item
+ (0.085568) glutrnaName: L-Glutamyl-tRNA(Glu)
Formula: C5H8NO4R
Charge: 0




click to see details on this item
+ (0.026184) glntrnaName: L-Glutaminyl-tRNA(Gln)
Formula: C5H10N2O3R
Charge: 1




click to see details on this item
+ (0.074691) glytrnaName: Glycyl-tRNA(Gly)
Formula: C2H5NO2R
Charge: 1




click to see details on this item
+ (0.017927) histrnaName: L-Histidyl-tRNA(His)
Formula: C6H9N3O2R
Charge: 1




click to see details on this item
+ (0.052143) iletrnaName: L-Isoleucyl-tRNA(Ile)
Formula: C6H13NO2R
Charge: 1




click to see details on this item
+ (0.079867) leutrnaName: L-Leucyl-tRNA(Leu)
Formula: C6H13NO2R
Charge: 1




click to see details on this item
+ (0.079083) lystrnaName: L-Lysine-tRNA (Lys)
Formula: C6H15N2O2R
Charge: 2




click to see details on this item
+ (0.012181) mettrnaName: L-Methionyl-tRNA (Met)
Formula: C5H11NO2SR
Charge: 1




click to see details on this item
+ (0.036544) phetrnaName: L-Phenylalanyl-tRNA(Phe)
Formula: C9H11NO2R
Charge: 1




click to see details on this item
+ (0.045145) protrnaName: L-Prolyl-tRNA(Pro)
Formula: C5H9NO2R
Charge: 1




click to see details on this item
+ (0.051284) sertrnaName: L-Seryl-tRNA(Ser)
Formula: C3H7NO3R
Charge: 1




click to see details on this item
+ (0.052305) thrtrnaName: L-Threonyl-tRNA(Thr)
Formula: C4H9NO3R
Charge: 1




click to see details on this item
+ (0.007259) trptrnaName: L-Tryptophanyl-tRNA(Trp)
Formula: C11H12N2O2R
Charge: 1




click to see details on this item
+ (0.027882) tyrtrnaName: L-Tyrosyl-tRNA(Tyr)
Formula: C9H11NO3R
Charge: 1




click to see details on this item
+ (0.071091) valtrnaName: L-Valyl-tRNA(Val)
Formula: C5H11NO2R
Charge: 1




click to see details on this item
prot_otherName: Non-mitochondrial protein
Formula: X
Charge: 0




click to see details on this item
+ (2.0) gdpName: GDP
Formula: C10H12N5O11P2
Charge: -3




click to see details on this item
+ (0.324) adpName: ADP
Formula: C10H12N5O10P2
Charge: -3




click to see details on this item
+ (3.324) hName: H+
Formula: H
Charge: 1




click to see details on this item
+ (2.324) piName: Phosphate
Formula: HO4P
Charge: -2




click to see details on this item
+ (0.12769) trnaalaName: tRNA(Ala)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.042387) trnaargName: tRNA(Arg)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.025739) trnaasnName: tRNA(Asn)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.084822) trnaaspName: tRNA(Asp)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.000208) trnacysName: tRNA(Cys)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.085568) trnagluName: tRNA (Glu)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.026184) trnaglnName: tRNA(Gln)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.074691) trnaglyName: tRNA(Gly)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.017927) trnahisName: tRNA(His)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.052143) trnaileName: tRNA(Ile)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.079867) trnaleuName: tRNA(Leu)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.079083) trnalysName: tRNA(Lys)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.012181) trnametName: tRNA(Met)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.036544) trnapheName: tRNA(Phe)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.045145) trnaproName: tRNA(Pro)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.051284) trnaserName: tRNA(Ser)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.052305) trnathrName: tRNA(Thr)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.007259) trnatrpName: tRNA(Trp)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.027882) trnatyrName: tRNA(Tyr)
Formula: ROH
Charge: 0




click to see details on this item
+ (0.071091) trnavalName: tRNA(Val)
Formula: ROH
Charge: 0




click to see details on this item
Not applicable
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To be determined
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