WormFlux: mechanistic analysis of C. elegans metabolism

Pathway Overview

Name .....................................................	:	Bacterial digestion
Related pathway (?) The pathway found in other databases to which this pathway is related. .....................................................	:	ERROR
Number of reactions .....................................................	:	30

In WormPaths (?) If the pathway is available as a WormPaths map you will find the name and link of map here. .....................................................	:	Not yet represented in WormPaths maps.

iCEL1314

KEGG

MetaCyc

Reactions (?) Click to see these reactions in the related KEGG pathway (only enzymes that are represented in kegg are highlighted).

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

DGR0001Name: Bacterial peptide degradation Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	3.4.23.-Name: bacterial peptide degradation click to see details on this item 3.4.-.-Name: bacterial peptide degradation Other names: protein lysine peptidase click to see details on this item	[c] : protein_BACName: Protein component of bacterial diet Formula: X Charge: 0 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item	(0.096044) ala-LName: L-Alanine Formula: C3H7NO2 Charge: 0 click to see details on this item + (0.055304) arg-LName: L-Arginine Formula: C6H15N4O2 Charge: 1 click to see details on this item + (0.04507) asn-LName: L-Asparagine Formula: C4H8N2O3 Charge: 0 click to see details on this item + (0.04507) asp-LName: L-Aspartate Formula: C4H6NO4 Charge: -1 click to see details on this item + (0.017123) cys-LName: L-Cysteine Formula: C3H7NO2S Charge: 0 click to see details on this item + (0.049203) glu-LName: L-Glutamate Formula: C5H8NO4 Charge: -1 click to see details on this item + (0.049203) gln-LName: L-Glutamine Formula: C5H10N2O3 Charge: 0 click to see details on this item + (0.114544) glyName: Glycine Formula: C2H5NO2 Charge: 0 click to see details on this item + (0.017713) his-LName: L-Histidine Formula: C6H9N3O2 Charge: 0 click to see details on this item + (0.05432) ile-LName: L-Isoleucine Formula: C6H13NO2 Charge: 0 click to see details on this item + (0.084235) leu-LName: L-Leucine Formula: C6H13NO2 Charge: 0 click to see details on this item + (0.064161) lys-LName: L-Lysine Formula: C6H15N2O2 Charge: 1 click to see details on this item + (0.028735) met-LName: L-Methionine Formula: C5H11NO2S Charge: 0 click to see details on this item + (0.034639) phe-LName: L-Phenylalanine Formula: C9H11NO2 Charge: 0 click to see details on this item + (0.04133) pro-LName: L-Proline Formula: C5H9NO2 Charge: 0 click to see details on this item + (0.040346) ser-LName: L-Serine Formula: C3H7NO3 Charge: 0 click to see details on this item + (0.047432) thr-LName: L-Threonine Formula: C4H9NO3 Charge: 0 click to see details on this item + (0.010628) trp-LName: L-Tryptophan Formula: C11H12N2O2 Charge: 0 click to see details on this item + (0.025782) tyr-LName: L-Tyrosine Formula: C9H11NO3 Charge: 0 click to see details on this item + (0.079118) val-LName: L-Valine Formula: C5H11NO2 Charge: 0 click to see details on this item	asp-1 \| asp-2 \| asp-3 \| asp-5 \| K12H4.7	Bacterial digestion
DGR0002Name: Bacterial RNA degradation Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : rna_BACName: RNA component of bacterial diet Formula: X Charge: 0 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item	(0.267606) ampName: AMP Formula: C10H12N5O7P Charge: -2 click to see details on this item + (0.197183) cmpName: CMP Formula: C9H12N3O8P Charge: -2 click to see details on this item + (0.317684) gmpName: GMP Formula: C10H12N5O8P Charge: -2 click to see details on this item + (0.217527) umpName: UMP Formula: C9H11N2O9P Charge: -2 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item	Not determined	Bacterial digestion
DGR0003Name: Bacterial DNA degradation Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : dna_BACName: DNA component of bacterial diet Formula: X Charge: 0 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item	(0.246507) dampName: dAMP Formula: C10H12N5O6P Charge: -2 click to see details on this item + (0.253493) dcmpName: dCMP Formula: C9H12N3O7P Charge: -2 click to see details on this item + (0.253493) dgmpName: dGMP Formula: C10H12N5O7P Charge: -2 click to see details on this item + (0.246507) dtmpName: dTMP Formula: C10H13N2O8P Charge: -2 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item	Not determined	Bacterial digestion
DGR0004Name: Bacterial fatty acid composition Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : Rtotal_BACName: R total from bacterial diet Formula: RCO2 Charge: -1 click to see details on this item	(0.056282) ttdcaName: tetradecanoate (n-C14:0) Formula: C14H27O2 Charge: -1 click to see details on this item + (0.430027) hdcaName: Hexadecanoate (n-C16:0) Formula: C16H31O2 Charge: -1 click to see details on this item + (0.042082) fa16p1n7Name: Palmitoleic acid Formula: C16H29O2 Charge: -1 click to see details on this item + (0.311026) fa17c9Name: cis-9,10-methylenehexadecanoic acid Formula: C17H31O2 Charge: -1 click to see details on this item + (0.065863) fa19c11Name: cis-11,12-methyleneoctadecanoic acid Formula: C19H35O2 Charge: -1 click to see details on this item + (0.09472) vaccName: Vaccenic acid Formula: C18H33O2 Charge: -1 click to see details on this item	Not applicable	Bacterial digestion
DGR0005Name: Bacterial phospholipid composition Type: Degradation Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	[e] : phospholipid_BACName: phospholipid component of E. coli diet Formula: X Charge: 0 click to see details on this item	(0.179791) pg_BACName: Phosphatidylglycerol (bacteria) Formula: C8H12O10PR2 Charge: -1 click to see details on this item + (0.750046) pe_BACName: Phosphatidylethanolamine (bacteria) Formula: C7H12NO8PR2 Charge: 0 click to see details on this item + (0.020146) ps_BACName: Phosphatidylserine (bacteria) Formula: C8H11NO10PR2 Charge: -1 click to see details on this item + (0.050017) clpn_BACName: Cardiolipin (bacteria) Formula: C13H16O17P2R4 Charge: -2 click to see details on this item	Not applicable	Bacterial digestion
DGR0006Name: Bacterial soluble pool composition Type: Degradation Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	[e] : soluble_BACName: Soluble pool in bacterial diet Formula: X Charge: 0 click to see details on this item	(0.00625) mobdName: Molybdate Formula: MoO4 Charge: -2 click to see details on this item + (0.0002) q8Name: Ubiquinone-8 Formula: C49H74O4 Charge: 0 click to see details on this item + (0.0002) thmName: Thiamin Formula: C12H17N4OS Charge: 1 click to see details on this item + (0.000903) thmppName: Thiamine diphosphate Formula: C12H16N4O7P2S Charge: -2 click to see details on this item + (0.0002) adocblName: Adenosylcobalamin Formula: C72H100CoN18O17P Charge: 0 click to see details on this item + (0.0002) selcysName: Selenocysteine Formula: C3H7NO2Se Charge: 0 click to see details on this item + (0.0002) cbl1Name: Cob(I)alamin Formula: C62H88CoN13O14P Charge: -1 click to see details on this item + (0.000443) ribflvName: Riboflavin Formula: C17H20N4O6 Charge: 0 click to see details on this item + (0.0002) phemeName: Protoheme Formula: C34H30FeN4O4 Charge: 0 click to see details on this item + (0.0002) pydxnName: Pyridoxine Formula: C8H11NO3 Charge: 0 click to see details on this item + (0.000893) fe2Name: Fe2+ Formula: Fe Charge: 2 click to see details on this item + (0.0002) pydamName: Pyridoxamine Formula: C8H13N2O2 Charge: 1 click to see details on this item + (0.001172) fmnName: FMN Formula: C17H19N4O9P Charge: -2 click to see details on this item + (0.0002) folName: Folate Formula: C19H18N7O6 Charge: -1 click to see details on this item + (0.004018) acornName: N2-Acetyl-L-ornithine Formula: C7H14N2O3 Charge: 0 click to see details on this item + (0.0002) pnto-RName: (R)-Pantothenate Formula: C9H16NO5 Charge: -1 click to see details on this item + (0.002774) fadName: Flavin adenine dinucleotide oxidized Formula: C27H31N9O15P2 Charge: -2 click to see details on this item + (0.0002) pydxName: Pyridoxal Formula: C8H9NO3 Charge: 0 click to see details on this item + (0.0002) tmaName: trimethylamine Formula: C3H10N Charge: 1 click to see details on this item + (0.0002) acserName: O-Acetyl-L-serine Formula: C5H9NO4 Charge: 0 click to see details on this item	Not applicable	Bacterial digestion
DGR0007Name: Bacterial degradation Type: Degradation Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	BACName: Bacteria in diet Formula: X Charge: 0 click to see details on this item[e] + (6.0) atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item[c] + (6.0) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item[c]	(0.129212) phospholipid_BACName: phospholipid component of E. coli diet Formula: X Charge: 0 click to see details on this item[e] + (5.037126) protein_BACName: Protein component of bacterial diet Formula: X Charge: 0 click to see details on this item[e] + (0.027377) peptido_BACName: Peptidoglycan subunit of bacteria Formula: C40H62N8O21 Charge: -2 click to see details on this item[e] + (0.135796) glycogen_BACName: glycogen Formula: C6H10O5 Charge: 0 click to see details on this item[e] + soluble_BACName: Soluble pool in bacterial diet Formula: X Charge: 0 click to see details on this item[e] + (0.008331) lps_BACName: Lipopolysaccharide (bacteria) Formula: C171H297N4O88P2 Charge: -7 click to see details on this item[e] + (0.099745) dna_BACName: DNA component of bacterial diet Formula: X Charge: 0 click to see details on this item[e] + (0.636031) rna_BACName: RNA component of bacterial diet Formula: X Charge: 0 click to see details on this item[e] + (6.0) adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c] + (6.0) hName: H+ Formula: H Charge: 1 click to see details on this item[c] + (6.0) piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item[c]	Not applicable	Bacterial digestion
DGR0008Name: Bacterial peptide uptake Type: Degradation Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	protein_BACName: Protein component of bacterial diet Formula: X Charge: 0 click to see details on this item[e]	protein_BACName: Protein component of bacterial diet Formula: X Charge: 0 click to see details on this item[c]	Not applicable	Bacterial digestion
DGR0009Name: Bacterial RNA uptake Type: Degradation Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	rna_BACName: RNA component of bacterial diet Formula: X Charge: 0 click to see details on this item[e]	rna_BACName: RNA component of bacterial diet Formula: X Charge: 0 click to see details on this item[c]	Not applicable	Bacterial digestion
DGR0010Name: Bacterial DNA uptake Type: Degradation Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	dna_BACName: DNA component of bacterial diet Formula: X Charge: 0 click to see details on this item[e]	dna_BACName: DNA component of bacterial diet Formula: X Charge: 0 click to see details on this item[c]	Not applicable	Bacterial digestion
DGR0011Name: Bacterial peptidoglycan uptake Type: Degradation Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	peptido_BACName: Peptidoglycan subunit of bacteria Formula: C40H62N8O21 Charge: -2 click to see details on this item[e]	peptido_BACName: Peptidoglycan subunit of bacteria Formula: C40H62N8O21 Charge: -2 click to see details on this item[c]	Not applicable	Bacterial digestion
DGR0012Name: Bacterial peptidoglycan degradation Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	To be determined	[c] : peptido_BACName: Peptidoglycan subunit of bacteria Formula: C40H62N8O21 Charge: -2 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item + (8) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item	(2) acgamName: N-Acetyl-D-glucosamine Formula: C8H15NO6 Charge: 0 click to see details on this item + lac-DName: D-Lactate Formula: C3H5O3 Charge: -1 click to see details on this item + glu-LName: L-Glutamate Formula: C5H8NO4 Charge: -1 click to see details on this item + (3) ala-LName: L-Alanine Formula: C3H7NO2 Charge: 0 click to see details on this item + lys-LName: L-Lysine Formula: C6H15N2O2 Charge: 1 click to see details on this item + co2Name: CO2 Formula: CO2 Charge: 0 click to see details on this item	Not determined	Bacterial digestion
DGR0013Name: Bacterial LPS degradation into lipa (inner LPS plus first two outer monomers) and outerlps_BAC (the rest of LPS) Type: Degradation Location: Extracellular KEGG ID: NA click to see details on this item	To be determined	[e] : lps_BACName: Lipopolysaccharide (bacteria) Formula: C171H297N4O88P2 Charge: -7 click to see details on this item	lipa_BACName: KDO(2)-lipid (A) Formula: C110H196N2O39P2 Charge: -6 click to see details on this item + outerlps_BACName: Outer section of lipopolysaccharide (bacteria) Formula: C61H101N2O49 Charge: -1 click to see details on this item	Not determined	Bacterial digestion
DGR0014Name: Bacterial lipa (inner LPS and first two monomers of outer section) uptake Type: Degradation Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	lipa_BACName: KDO(2)-lipid (A) Formula: C110H196N2O39P2 Charge: -6 click to see details on this item[e]	lipa_BACName: KDO(2)-lipid (A) Formula: C110H196N2O39P2 Charge: -6 click to see details on this item[c]	Not applicable	Bacterial digestion
DGR0015Name: Bacterial outer LPS (except for the first two monomers embedded in lipa) uptake Type: Degradation Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	outerlps_BACName: Outer section of lipopolysaccharide (bacteria) Formula: C61H101N2O49 Charge: -1 click to see details on this item[e]	outerlps_BACName: Outer section of lipopolysaccharide (bacteria) Formula: C61H101N2O49 Charge: -1 click to see details on this item[c]	Not applicable	Bacterial digestion
DGR0016Name: Bacterial lipa (inner LPS and first two monomers of outer section) degradation Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	To be determined	[c] : lipa_BACName: KDO(2)-lipid (A) Formula: C110H196N2O39P2 Charge: -6 click to see details on this item + (4) nadhName: Nicotinamide adenine dinucleotide - reduced Formula: C21H27N7O14P2 Charge: -2 click to see details on this item + (5) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item	ddcaName: Dodecanoate (n-C12:0) Formula: C12H23O2 Charge: -1 click to see details on this item + (5) ttdcaName: tetradecanoate (n-C14:0) Formula: C14H27O2 Charge: -1 click to see details on this item + (4) nadName: Nicotinamide adenine dinucleotide Formula: C21H26N7O14P2 Charge: -1 click to see details on this item + (2) r5pName: alpha-D-Ribose 5-phosphate Formula: C5H9O8P Charge: -2 click to see details on this item + (2) pyrName: Pyruvate Formula: C3H3O3 Charge: -1 click to see details on this item + (2) gamName: D-Glucosamine Formula: C6H14NO5 Charge: 1 click to see details on this item	Not determined	Bacterial digestion
DGR0017Name: Bacterial outer LPS (except for the first two monomers embedded in lipa) degradation Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	To be determined	[c] : outerlps_BACName: Outer section of lipopolysaccharide (bacteria) Formula: C61H101N2O49 Charge: -1 click to see details on this item + (10) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + (4) hName: H+ Formula: H Charge: 1 click to see details on this item + (2) nadhName: Nicotinamide adenine dinucleotide - reduced Formula: C21H27N7O14P2 Charge: -2 click to see details on this item	(9) glc-D-AName: alpha-D-Glucose Formula: C6H12O6 Charge: 0 click to see details on this item + (2) ethaName: Ethanolamine Formula: C2H8NO Charge: 1 click to see details on this item + pyrName: Pyruvate Formula: C3H3O3 Charge: -1 click to see details on this item + (2) nadName: Nicotinamide adenine dinucleotide Formula: C21H26N7O14P2 Charge: -1 click to see details on this item	Not determined	Bacterial digestion
DGR0018Name: Bacterial phosphatidylethanolamine uptake Type: Degradation Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	pe_BACName: Phosphatidylethanolamine (bacteria) Formula: C7H12NO8PR2 Charge: 0 click to see details on this item[e]	pe_BACName: Phosphatidylethanolamine (bacteria) Formula: C7H12NO8PR2 Charge: 0 click to see details on this item[c]	Not applicable	Bacterial digestion
DGR0019Name: Bacterial phosphatidylethanolamine degradation Type: Degradation Location: Cytosol KEGG ID: R02053 click to see details on this item	3.1.1.4Name: phospholipase A2 Other names: lecithinase A, phosphatidase, phosphatidolipase, phospholipase A click to see details on this item	[c] : pe_BACName: Phosphatidylethanolamine (bacteria) Formula: C7H12NO8PR2 Charge: 0 click to see details on this item + (2) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item	g3peName: sn-Glycero-3-phosphoethanolamine Formula: C5H14NO6P Charge: 0 click to see details on this item + (2) Rtotal_BACName: R total from bacterial diet Formula: RCO2 Charge: -1 click to see details on this item + (2) hName: H+ Formula: H Charge: 1 click to see details on this item	ipla-1 \| ipla-2 \| ipla-3 \| ipla-4 \| ipla-5 \| ipla-6 \| ipla-7 \| C07E3.9 \| Y69A2AL.2	Bacterial digestion
DGR0020Name: Bacterial phosphatidylglycerol uptake Type: Degradation Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	pg_BACName: Phosphatidylglycerol (bacteria) Formula: C8H12O10PR2 Charge: -1 click to see details on this item[e]	pg_BACName: Phosphatidylglycerol (bacteria) Formula: C8H12O10PR2 Charge: -1 click to see details on this item[c]	Not applicable	Bacterial digestion
DGR0021Name: Bacterial phosphatidylglycerol degradation Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	3.1.1.4Name: phospholipase A2 Other names: lecithinase A, phosphatidase, phosphatidolipase, phospholipase A click to see details on this item	[c] : pg_BACName: Phosphatidylglycerol (bacteria) Formula: C8H12O10PR2 Charge: -1 click to see details on this item + (3) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item	glyc3pName: Glycerol 3-phosphate Formula: C3H7O6P Charge: -2 click to see details on this item + glycName: Glycerol Formula: C3H8O3 Charge: 0 click to see details on this item + (2) Rtotal_BACName: R total from bacterial diet Formula: RCO2 Charge: -1 click to see details on this item + (3) hName: H+ Formula: H Charge: 1 click to see details on this item	ipla-1 \| ipla-2 \| ipla-3 \| ipla-4 \| ipla-5 \| ipla-6 \| ipla-7 \| C07E3.9 \| Y69A2AL.2	Bacterial digestion
DGR0022Name: Bacterial cardiolipin uptake Type: Degradation Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	clpn_BACName: Cardiolipin (bacteria) Formula: C13H16O17P2R4 Charge: -2 click to see details on this item[e]	clpn_BACName: Cardiolipin (bacteria) Formula: C13H16O17P2R4 Charge: -2 click to see details on this item[c]	Not applicable	Bacterial digestion
DGR0023Name: Bacterial cardiolipin degradation (major components) Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	To be determined	[c] : clpn_BACName: Cardiolipin (bacteria) Formula: C13H16O17P2R4 Charge: -2 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item	pg_BACName: Phosphatidylglycerol (bacteria) Formula: C8H12O10PR2 Charge: -1 click to see details on this item + pa_BACName: Phosphatidate (bacteria) Formula: C5H5O8PR2 Charge: -2 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item	Not determined	Bacterial digestion
DGR0024Name: Bacterial phosphatidate degradation Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	3.1.1.4Name: phospholipase A2 Other names: lecithinase A, phosphatidase, phosphatidolipase, phospholipase A click to see details on this item	[c] : pa_BACName: Phosphatidate (bacteria) Formula: C5H5O8PR2 Charge: -2 click to see details on this item + (3) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item	glycName: Glycerol Formula: C3H8O3 Charge: 0 click to see details on this item + (2) Rtotal_BACName: R total from bacterial diet Formula: RCO2 Charge: -1 click to see details on this item + (2) hName: H+ Formula: H Charge: 1 click to see details on this item + piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item	ipla-1 \| ipla-2 \| ipla-3 \| ipla-4 \| ipla-5 \| ipla-6 \| ipla-7 \| C07E3.9 \| Y69A2AL.2	Bacterial digestion
DGR0025Name: Bacterial phosphatidylserine uptake Type: Degradation Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	ps_BACName: Phosphatidylserine (bacteria) Formula: C8H11NO10PR2 Charge: -1 click to see details on this item[e]	ps_BACName: Phosphatidylserine (bacteria) Formula: C8H11NO10PR2 Charge: -1 click to see details on this item[c]	Not applicable	Bacterial digestion
DGR0026Name: Bacterial phosphatidylserine degradation Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	3.1.1.4Name: phospholipase A2 Other names: lecithinase A, phosphatidase, phosphatidolipase, phospholipase A click to see details on this item	[c] : ps_BACName: Phosphatidylserine (bacteria) Formula: C8H11NO10PR2 Charge: -1 click to see details on this item + (3) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item	pser-LName: O-Phospho-L-serine Formula: C3H6NO6P Charge: -2 click to see details on this item + glycName: Glycerol Formula: C3H8O3 Charge: 0 click to see details on this item + (2) Rtotal_BACName: R total from bacterial diet Formula: RCO2 Charge: -1 click to see details on this item + (3) hName: H+ Formula: H Charge: 1 click to see details on this item	ipla-1 \| ipla-2 \| ipla-3 \| ipla-4 \| ipla-5 \| ipla-6 \| ipla-7 \| C07E3.9 \| Y69A2AL.2	Bacterial digestion
DGR0027Name: Glycogen assimilation Type: Degradation Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	glycogen_BACName: glycogen Formula: C6H10O5 Charge: 0 click to see details on this item[e]	glycogen_BACName: glycogen Formula: C6H10O5 Charge: 0 click to see details on this item[c]	Not applicable	Bacterial digestion
DGR0028Name: Bacterial glycogen degradation Type: Degradation Location: Cytosol KEGG ID: R01821 click to see details on this item	2.4.1.1Name: glycogen phosphorylase Other names: muscle phosphorylase a and b, amylophosphorylase, polyphosphorylase, amylopectin phosphorylase, glucan phosphorylase, alpha-glucan phosphorylase, 1,4-alpha-glucan phosphorylase, glucosan phosphorylase, granulose phosphorylase, maltodextrin phosphorylase, muscle phosphorylase, myophosphorylase, potato phosphorylase, starch phosphorylase, 1,4-alpha-D-glucan:phosphate alpha-D-glucosyltransferase, phosphorylase (ambiguous) click to see details on this item	[c] : glycogen_BACName: glycogen Formula: C6H10O5 Charge: 0 click to see details on this item + (0.5) piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item	(0.5) g1pName: D-Glucose 1-phosphate Formula: C6H11O9P Charge: -2 click to see details on this item + (0.5) dxtrn1Name: Limited dextrin 1 Formula: C6H10O5 Charge: 0 click to see details on this item	T22F3.3	Bacterial digestion
DGR0029Name: Dephosphorylation of thiamine pyrophosphate Type: Degradation Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	[e] : (2) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + thmppName: Thiamine diphosphate Formula: C12H16N4O7P2S Charge: -2 click to see details on this item	hName: H+ Formula: H Charge: 1 click to see details on this item + (2) piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item + thmName: Thiamin Formula: C12H17N4OS Charge: 1 click to see details on this item	Not applicable	Bacterial digestion
EXC0050Name: Bacterial uptake Type: Exchange Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	BACName: Bacteria in diet Formula: X Charge: 0 click to see details on this item[e]		Not applicable	Bacterial digestion

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