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(?) Enter a search word or phrase (left box), optionally select an appropriate field (middle), and hit the search button or press enter. This search engine is NOT case sensitive.

Use wild characters " ? " and " * " for efficient search:
  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
WormClustClustering- and enrichment-based association of genes with the metabolic network
Metabolite Overview
Abbreviation ..................................................... : lps_BAC
Name ..................................................... : Lipopolysaccharide (bacteria)
Model ID ..................................................... : CC0055
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : Not available
Formula ..................................................... : C171H297N4O88P2
Charge ..................................................... : -7
Localization ..................................................... : Extracellular
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : lps_EC
Other associations ..................................................... : See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space ..................................................... 		: Not yet represented in WormPaths maps.
Comments
  • Charge is based on matching BiGG compounds.

    • Reactions
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.     		Pathway
    DGR0007Name: Bacterial degradation
    Type: Degradation
    Location: Cytosol, Extracellular
    KEGG ID: NA

    click to see details on this item
    Not applicable
    BACName: Bacteria in diet
    Formula: X
    Charge: 0




    click to see details on this item    [e] + (6.0) atpName: ATP
    Formula: C10H12N5O13P3
    Charge: -4




    click to see details on this item    [c] + (6.0) h2oName: H2O
    Formula: H2O
    Charge: 0




    click to see details on this item    [c]
    (0.129212) phospholipid_BACName: phospholipid component of E. coli diet
    Formula: X
    Charge: 0




    click to see details on this item    [e] + (5.037126) protein_BACName: Protein component of bacterial diet
    Formula: X
    Charge: 0




    click to see details on this item    [e] + (0.027377) peptido_BACName: Peptidoglycan subunit of bacteria
    Formula: C40H62N8O21
    Charge: -2




    click to see details on this item    [e] + (0.135796) glycogen_BACName: glycogen
    Formula: C6H10O5
    Charge: 0




    click to see details on this item    [e] + soluble_BACName: Soluble pool in bacterial diet
    Formula: X
    Charge: 0




    click to see details on this item    [e] + (0.008331) lps_BACName: Lipopolysaccharide (bacteria)
    Formula: C171H297N4O88P2
    Charge: -7




    click to see details on this item    [e] + (0.099745) dna_BACName: DNA component of bacterial diet
    Formula: X
    Charge: 0




    click to see details on this item    [e] + (0.636031) rna_BACName: RNA component of bacterial diet
    Formula: X
    Charge: 0




    click to see details on this item    [e] + (6.0) adpName: ADP
    Formula: C10H12N5O10P2
    Charge: -3




    click to see details on this item    [c] + (6.0) hName: H+
    Formula: H
    Charge: 1




    click to see details on this item    [c] + (6.0) piName: Phosphate
    Formula: HO4P
    Charge: -2




    click to see details on this item    [c]
    Not applicable
    Bacterial digestion
    DGR0013Name: Bacterial LPS degradation into lipa (inner LPS plus first two outer monomers) and outerlps_BAC (the rest of LPS)
    Type: Degradation
    Location: Extracellular
    KEGG ID: NA

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    To be determined
    [e] : lps_BACName: Lipopolysaccharide (bacteria)
    Formula: C171H297N4O88P2
    Charge: -7




    click to see details on this item
    lipa_BACName: KDO(2)-lipid (A)
    Formula: C110H196N2O39P2
    Charge: -6




    click to see details on this item     + outerlps_BACName: Outer section of lipopolysaccharide (bacteria)
    Formula: C61H101N2O49
    Charge: -1




    click to see details on this item
    Not determined
    Bacterial digestion
    EXC0055Name: Lipopolysaccharide (bacteria) exchange
    Type: Exchange
    Location: Extracellular
    KEGG ID: NA

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    Not applicable
    lps_BACName: Lipopolysaccharide (bacteria)
    Formula: C171H297N4O88P2
    Charge: -7




    click to see details on this item    [e]
    Not applicable
    Exchange with the environment
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