Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Walhout Lab web page:
walhoutlab.umassmed.edu

Email for WormFlux:
lutfu.yilmaz@umassmed.edu

Citation

If you use WormFlux in a published work please cite:

• Yilmaz, L.S. and Walhout, A.J.M. (2016) "A Caenorhabditis elegans Genome-Scale Metabolic Network Model", Cell Systems, 5:297-311.

If you use iCEL1314 in a published work please cite:

• Yilmaz, L.S.,Li, X, et al. (2020) "Modeling tissue-relevant Caenorhabditis elegans metabolism at network, pathway, reaction, and metabolite levels", Mol Syst Biol, 16:e9649.

If you use WormPaths or Pathway Enrichment Analysis tool (PEA) in a published work please cite:

• Walker, M.D.,Giese, G.E., Holdorf, A.D. et al. (2020) "WormPaths: Caenorhabditis elegans metabolic pathway annotation and visualization", Genetics, doi: 10.1093/genetics/iyab089.

The information and tools provided in this website are to be used for academic purposes only.