Network Biomass WormPaths

PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network WPSWorm Perturb-Seq portal

Metabolite Overview

Abbreviation .....................................................	:	cdp
Name .....................................................	:	CDP, etc.Cytidine 5'-diphosphate, Cytidine diphosphate
Model ID .....................................................	:	C00112
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C00112
Formula .....................................................	:	C9H12N3O11P2
Charge .....................................................	:	-3
Localization .....................................................	:	Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	cdp
Other associations .....................................................	:	See reaction table below (6 reactions in total)
In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Ascaroside biosynthesis (c), N-Glycan biosynthesis (c), Pyrimidine metabolism (c)

iCEL1314

Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&). I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme). & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme). If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RCC0211Name: very long chain ascaroside (w-ascr-C27) synthesis Type: Regular Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : fa28p0coaName: octacosanoyl-CoA Formula: C49H86N7O17P3S Charge: -4 click to see details on this item + akgName: 2-Oxoglutarate Formula: C5H4O5 Charge: -2 click to see details on this item + (2) o2Name: O2 Formula: O2 Charge: 0 click to see details on this item + nadName: Nicotinamide adenine dinucleotide Formula: C21H26N7O14P2 Charge: -1 click to see details on this item + nadphName: Nicotinamide adenine dinucleotide phosphate - reduced Formula: C21H26N7O17P3 Charge: -4 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + cdpasclName: CDP-ascarylose Formula: C15H23N3O14P2 Charge: -2 click to see details on this item		27ascfa27p0coaName: 27-ascaryl-heptacosanoic acyl coa Formula: C54H94N7O21P3S Charge: -4 click to see details on this item + succName: Succinate Formula: C4H4O4 Charge: -2 click to see details on this item + co2Name: CO2 Formula: CO2 Charge: 0 click to see details on this item + nadhName: Nicotinamide adenine dinucleotide - reduced Formula: C21H27N7O14P2 Charge: -2 click to see details on this item + (3) hName: H+ Formula: H Charge: 1 click to see details on this item + ampName: AMP Formula: C10H12N5O7P Charge: -2 click to see details on this item + ppiName: Diphosphate Formula: HO7P2 Charge: -3 click to see details on this item + nadpName: Nicotinamide adenine dinucleotide phosphate Formula: C21H25N7O17P3 Charge: -3 click to see details on this item + cdpName: CDP Formula: C9H12N3O11P2 Charge: -3 click to see details on this item + forName: Formate Formula: CH1O2 Charge: -1 click to see details on this item	Unknown	Ascaroside biosynthesis
RCC0227Name: very long chain ascaroside ((w-1)-ascr-C27) synthesis Type: Regular Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : fa28p0coaName: octacosanoyl-CoA Formula: C49H86N7O17P3S Charge: -4 click to see details on this item + (3) o2Name: O2 Formula: O2 Charge: 0 click to see details on this item + cdpasclName: CDP-ascarylose Formula: C15H23N3O14P2 Charge: -2 click to see details on this item + nadphName: Nicotinamide adenine dinucleotide phosphate - reduced Formula: C21H26N7O17P3 Charge: -4 click to see details on this item		26ascfa27p0coaName: 26-ascaryl-heptacosanoic acyl coa Formula: C54H94N7O21P3S Charge: -4 click to see details on this item + h2o2Name: Hydrogen peroxide Formula: H2O2 Charge: 0 click to see details on this item + cdpName: CDP Formula: C9H12N3O11P2 Charge: -3 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + co2Name: CO2 Formula: CO2 Charge: 0 click to see details on this item + nadpName: Nicotinamide adenine dinucleotide phosphate Formula: C21H25N7O17P3 Charge: -3 click to see details on this item	Unknown	Ascaroside biosynthesis
RC01018Name: Dolichol kinase Type: Regular Location: Cytosol KEGG ID: R01018 click to see details on this item	2.7.1.108Name: dolichol kinase Other names: dolichol phosphokinase click to see details on this item	[c] : ctpName: CTP Formula: C9H12N3O14P3 Charge: -4 click to see details on this item + dolicholName: Dolichol Formula: C110H180O Charge: 0 click to see details on this item		cdpName: CDP Formula: C9H12N3O11P2 Charge: -3 click to see details on this item + dolpName: Dolichol phosphate Formula: C110H179O4P Charge: -2 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item	Y56A3A.36	N-Glycan biosynthesis
RC00570Name: ATP:CDP phosphotransferase Type: Regular Location: Cytosol KEGG ID: R00570 click to see details on this item	2.7.4.6Name: nucleoside-diphosphate kinase Other names: nucleoside 5'-diphosphate kinase, nucleoside diphosphate (UDP) kinase, nucleoside diphosphokinase, nucleotide phosphate kinase, UDP kinase, uridine diphosphate kinase click to see details on this item	[c] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + cdpName: CDP Formula: C9H12N3O11P2 Charge: -3 click to see details on this item		adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + ctpName: CTP Formula: C9H12N3O14P3 Charge: -4 click to see details on this item	R05G6.5 | Y48G8AL.15 | ndk-1	Pyrimidine metabolism
RC00512Name: ATP:CMP phosphotransferase Type: Regular Location: Cytosol KEGG ID: R00512 click to see details on this item	2.7.4.14Name: UMP/CMP kinase Other names: cytidylate kinase, deoxycytidylate kinase, CTP:CMP phosphotransferase, dCMP kinase, deoxycytidine monophosphokinase, UMP-CMP kinase, ATP:UMP-CMP phosphotransferase, pyrimidine nucleoside monophosphate kinase, uridine monophosphate-cytidine monophosphate phosphotransferase click to see details on this item	[c] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + cmpName: CMP Formula: C9H12N3O8P Charge: -2 click to see details on this item		adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + cdpName: CDP Formula: C9H12N3O11P2 Charge: -3 click to see details on this item	C29F7.3 | F40F8.1	Pyrimidine metabolism
RC02024Name: 2-Deoxycytidine diphosphate:oxidized-thioredoxin 2-oxidoreductase Type: Regular Location: Cytosol KEGG ID: R02024 click to see details on this item	1.17.4.1Name: ribonucleoside-diphosphate reductase Other names: ribonucleotide reductase, CDP reductase, ribonucleoside diphosphate reductase, UDP reductase, ADP reductase, nucleoside diphosphate reductase, ribonucleoside 5'-diphosphate reductase, ribonucleotide diphosphate reductase, 2'-deoxyribonucleoside-diphosphate:oxidized-thioredoxin 2'-oxidoreductase, RR click to see details on this item	[c] : cdpName: CDP Formula: C9H12N3O11P2 Charge: -3 click to see details on this item + trdrdName: Reduced thioredoxin Formula: XH2 Charge: 0 click to see details on this item		dcdpName: dCDP Formula: C9H12N3O10P2 Charge: -3 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + trdoxName: Oxidized thioredoxin Formula: X Charge: 0 click to see details on this item	rnr-1 & rnr-2 & (F19G12.2 | F58F9.1)	Pyrimidine metabolism

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