Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Metabolite Overview

Abbreviation .....................................................	:	dcmp
Name .....................................................	:	dCMP, etc.Deoxycytidylic acid, Deoxycytidine monophosphate, Deoxycytidylate, 2'-Deoxycytidine 5'-monophosphate
Model ID .....................................................	:	C00239
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C00239
Formula .....................................................	:	C9H12N3O7P
Charge .....................................................	:	-2
Localization .....................................................	:	Cytosol, Extracellular
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	dcmp
Other associations .....................................................	:	See reaction table below (6 reactions in total)
In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Pyrimidine metabolism (c)

iCEL1314

Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&). I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme). & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme). If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC01665Name: ATP:dCMP phosphotransferase Type: Regular Location: Cytosol KEGG ID: R01665 click to see details on this item	2.7.4.14Name: UMP/CMP kinase Other names: cytidylate kinase, deoxycytidylate kinase, CTP:CMP phosphotransferase, dCMP kinase, deoxycytidine monophosphokinase, UMP-CMP kinase, ATP:UMP-CMP phosphotransferase, pyrimidine nucleoside monophosphate kinase, uridine monophosphate-cytidine monophosphate phosphotransferase click to see details on this item	[c] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + dcmpName: dCMP Formula: C9H12N3O7P Charge: -2 click to see details on this item		adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + dcdpName: dCDP Formula: C9H12N3O10P2 Charge: -3 click to see details on this item	C29F7.3 | F40F8.1	Pyrimidine metabolism
RC01664Name: 2-Deoxycytidine 5-monophosphate phosphohydrolase Type: Regular Location: Cytosol KEGG ID: R01664 click to see details on this item	3.1.3.5Name: 5'-nucleotidase Other names: uridine 5'-nucleotidase, 5'-adenylic phosphatase, adenosine 5'-phosphatase, AMP phosphatase, adenosine monophosphatase, 5'-mononucleotidase, AMPase, UMPase, snake venom 5'-nucleotidase, thimidine monophosphate nucleotidase, 5'-AMPase, 5'-AMP nucleotidase, AMP phosphohydrolase, IMP 5'-nucleotidase click to see details on this item	[c] : dcmpName: dCMP Formula: C9H12N3O7P Charge: -2 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item		dcytName: Deoxycytidine Formula: C9H13N3O4 Charge: 0 click to see details on this item + piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item	F25B5.3 | Y10G11A.1 | Y71H10B.1	Pyrimidine metabolism
RC01663Name: dCMP aminohydrolase Type: Regular Location: Cytosol KEGG ID: R01663 click to see details on this item	3.5.4.12Name: dCMP deaminase Other names: deoxycytidylate deaminase, deoxy-CMP-deaminase, deoxycytidylate aminohydrolase, deoxycytidine monophosphate deaminase, deoxycytidine-5'-phosphate deaminase, deoxycytidine-5'-monophosphate aminohydrolase click to see details on this item	[c] : dcmpName: dCMP Formula: C9H12N3O7P Charge: -2 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item		dumpName: dUMP Formula: C9H11N2O8P Charge: -2 click to see details on this item + nh4Name: Ammonium Formula: H4N Charge: 1 click to see details on this item	ZK643.2	Pyrimidine metabolism
DGR0003Name: Bacterial DNA degradation Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : dna_BACName: DNA component of bacterial diet Formula: X Charge: 0 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item		(0.246507) dampName: dAMP Formula: C10H12N5O6P Charge: -2 click to see details on this item + (0.253493) dcmpName: dCMP Formula: C9H12N3O7P Charge: -2 click to see details on this item + (0.253493) dgmpName: dGMP Formula: C10H12N5O7P Charge: -2 click to see details on this item + (0.246507) dtmpName: dTMP Formula: C10H13N2O8P Charge: -2 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item	Not determined	Bacterial digestion
TCE5319Name: dCMP transport Type: Transport Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	dcmpName: dCMP Formula: C9H12N3O7P Charge: -2 click to see details on this item[e]		dcmpName: dCMP Formula: C9H12N3O7P Charge: -2 click to see details on this item[c]	Not determined	Transport
EX00239Name: dCMP exchange Type: Exchange Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	dcmpName: dCMP Formula: C9H12N3O7P Charge: -2 click to see details on this item[e]			Not applicable	Exchange with the environment

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