WormFlux: mechanistic analysis of C. elegans metabolism

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? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Metabolite Overview

Abbreviation .....................................................	:	dgdp
Name .....................................................	:	dGDP, etc.2'-Deoxyguanosine 5'-diphosphate
Model ID .....................................................	:	C00361
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C00361
Formula .....................................................	:	C10H12N5O10P2
Charge .....................................................	:	-3
Localization .....................................................	:	Mitochondria, Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	dgdp
Other associations .....................................................	:	See reaction table below (17 reactions in total)

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Purine metabolism (c)

iCEL1314

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Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC02019Name: 2-Deoxyguanosine 5-diphosphate:oxidized-thioredoxin 2-oxidoreductase Type: Regular Location: Cytosol KEGG ID: R02019 click to see details on this item	1.17.4.1Name: ribonucleoside-diphosphate reductase Other names: ribonucleotide reductase, CDP reductase, ribonucleoside diphosphate reductase, UDP reductase, ADP reductase, nucleoside diphosphate reductase, ribonucleoside 5'-diphosphate reductase, ribonucleotide diphosphate reductase, 2'-deoxyribonucleoside-diphosphate:oxidized-thioredoxin 2'-oxidoreductase, RR click to see details on this item	[c] : gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + trdrdName: Reduced thioredoxin Formula: XH2 Charge: 0 click to see details on this item		dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + trdoxName: Oxidized thioredoxin Formula: X Charge: 0 click to see details on this item	rnr-1 & rnr-2 & (F19G12.2 \| F58F9.1)	Purine metabolism
RC02090Name: ATP:dGMP phosphotransferase Type: Regular Location: Cytosol KEGG ID: R02090 click to see details on this item	2.7.4.8Name: guanylate kinase Other names: deoxyguanylate kinase, 5'-GMP kinase, GMP kinase, guanosine monophosphate kinase, ATP:GMP phosphotransferase click to see details on this item	[c] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + dgmpName: dGMP Formula: C10H12N5O7P Charge: -2 click to see details on this item		adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item	guk-1	Purine metabolism
RC01857Name: ATP:dGDP phosphotransferase Type: Regular Location: Cytosol KEGG ID: R01857 click to see details on this item	2.7.4.6Name: nucleoside-diphosphate kinase Other names: nucleoside 5'-diphosphate kinase, nucleoside diphosphate (UDP) kinase, nucleoside diphosphokinase, nucleotide phosphate kinase, UDP kinase, uridine diphosphate kinase click to see details on this item	[c] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item		adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + dgtpName: dGTP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item	R05G6.5 \| Y48G8AL.15 \| ndk-1	Purine metabolism
TCM0218Name: dGDP and dATP transport Type: Transport Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	datpName: dATP Formula: C10H12N5O12P3 Charge: -4 click to see details on this item[c] + dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[m]		datpName: dATP Formula: C10H12N5O12P3 Charge: -4 click to see details on this item[m] + dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c]	Not determined	Transport
TCM0066Name: dGDP and dADP transport Type: Transport Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	dadpName: dADP Formula: C10H12N5O9P2 Charge: -3 click to see details on this item[m] + dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c]		dadpName: dADP Formula: C10H12N5O9P2 Charge: -3 click to see details on this item[c] + dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[m]	Not determined	Transport
TCM0140Name: dGDP and ATP transport Type: Transport Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item[m] + dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c]		atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item[c] + dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[m]	Not determined	Transport
TCM0099Name: dGDP and dCDP transport Type: Transport Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	dcdpName: dCDP Formula: C9H12N3O10P2 Charge: -3 click to see details on this item[m] + dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c]		dcdpName: dCDP Formula: C9H12N3O10P2 Charge: -3 click to see details on this item[c] + dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[m]	Not determined	Transport
TCM0098Name: dGDP and dGTP transport Type: Transport Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[m] + dgtpName: dGTP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item[c]		dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c] + dgtpName: dGTP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item[m]	Not determined	Transport
TCM0116Name: dTTP and dGDP transport Type: Transport Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[m] + dttpName: dTTP Formula: C10H13N2O14P3 Charge: -4 click to see details on this item[c]		dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c] + dttpName: dTTP Formula: C10H13N2O14P3 Charge: -4 click to see details on this item[m]	Not determined	Transport
TCM0114Name: dUDP and dGDP transport Type: Transport Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c] + dudpName: dUDP Formula: C9H11N2O11P2 Charge: -3 click to see details on this item[m]		dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[m] + dudpName: dUDP Formula: C9H11N2O11P2 Charge: -3 click to see details on this item[c]	Not determined	Transport
TCM0083Name: dGDP and dCDP transport Type: Transport Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	dcdpName: dCDP Formula: C9H12N3O10P2 Charge: -3 click to see details on this item[c] + dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[m]		dcdpName: dCDP Formula: C9H12N3O10P2 Charge: -3 click to see details on this item[m] + dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c]	Not determined	Transport
TCM0188Name: dGDP and dCTP transport Type: Transport Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	dctpName: dCTP Formula: C9H12N3O13P3 Charge: -4 click to see details on this item[c] + dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[m]		dctpName: dCTP Formula: C9H12N3O13P3 Charge: -4 click to see details on this item[m] + dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c]	Not determined	Transport
TCM0221Name: dUTP and dGDP transport Type: Transport Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[m] + dutpName: dUTP Formula: C9H11N2O14P3 Charge: -4 click to see details on this item[c]		dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c] + dutpName: dUTP Formula: C9H11N2O14P3 Charge: -4 click to see details on this item[m]	Not determined	Transport
TCM0171Name: dGDP and dADP transport Type: Transport Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	dadpName: dADP Formula: C10H12N5O9P2 Charge: -3 click to see details on this item[c] + dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[m]		dadpName: dADP Formula: C10H12N5O9P2 Charge: -3 click to see details on this item[m] + dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c]	Not determined	Transport
TCM0172Name: dTDP and dGDP transport Type: Transport Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c] + dtdpName: dTDP Formula: C10H13N2O11P2 Charge: -3 click to see details on this item[m]		dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[m] + dtdpName: dTDP Formula: C10H13N2O11P2 Charge: -3 click to see details on this item[c]	Not determined	Transport
TCM0076Name: dUDP and dGDP transport Type: Transport Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[m] + dudpName: dUDP Formula: C9H11N2O11P2 Charge: -3 click to see details on this item[c]		dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c] + dudpName: dUDP Formula: C9H11N2O11P2 Charge: -3 click to see details on this item[m]	Not determined	Transport
TCM0105Name: dTDP and dGDP transport Type: Transport Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[m] + dtdpName: dTDP Formula: C10H13N2O11P2 Charge: -3 click to see details on this item[c]		dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c] + dtdpName: dTDP Formula: C10H13N2O11P2 Charge: -3 click to see details on this item[m]	Not determined	Transport

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