Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Walhout Lab web page:
walhoutlab.umassmed.edu

Email for WormPaths:
lutfu.yilmaz@umassmed.edu

WormPaths is a collection of 62 interactive pathway maps that cover most of C. elegans metabolism represented by iCEL1314. You can:

• Go to a particular pathway map using the alphabetical drop-down list in "Select pathway" section.
• Search for a gene, metabolite, or pathway using the "Search item" section. The links will take you to WormFlux pages of the items found. If the item is associated with any WormPaths maps, these maps will be shown in the overview table for that item.

Note: WormPaths is optimized for Firefox and Chrome, and is mostly compatible with Safari. We know that it does not work with IE and we have not thoroughly checked it with other browsers.

Select pathway

None selected Alanine metabolism Amino sugar and nucleotide sugar metabolism Arginine metabolism Ascaroside biosynthesis Aspartate and asparagine metabolism Biosynthesis of bile acid-like molecules Collagen biosynthesis Cysteine metabolism Electron transport chain Ether lipid metabolism Fatty acid biosynthesis Folate biosynthesis Folate cycle Fructose and mannose metabolism Galactose metabolism Glutamate / glutamine metabolism Glutathione metabolism Glycerolipid metabolism Glycerophospholipid metabolism Glycine and threonine metabolism Glycolysis / gluconeogenesis Glyoxylate and dicarboxylate metabolism Histidine degradation Inositol phosphate metabolism Iron metabolism Isoleucine degradation Ketone body metabolism Leucine degradation Lysine degradation Methionine / S-adenosylmethionine cycle Methionine salvage Methylglyoxal detoxification Mevalonate metabolism Mitochondrial fatty acid degradation Molybdenum cofactor biosynthesis N-Glycan biosynthesis Nicotinate and nicotinamide metabolism Pantothenate and CoA biosynthesis Pentose and glucuronate interconversions Pentose phosphate pathway Peroxisomal fatty acid degradation Phenylalanine degradation Proline metabolism Propionate degradation Purine metabolism Pyrimidine metabolism Pyruvate metabolism Reactive oxygen species metabolism Retinol metabolism Riboflavin metabolism Selenocompound metabolism Serine metabolism Sphingolipid metabolism Starch and sucrose metabolism Sulfur metabolism TCA cycle Taurine and hypotaurine metabolism Tryptophan degradation Tyrosine metabolism Ubiquinone metabolism Valine degradation Vitamin B6 metabolism

SHOW PATHWAY

Search item