WormFlux: mechanistic analysis of C. elegans metabolism

HOME DOWNLOAD CITATION HELP

(?) Enter a search word or phrase (left box), optionally select an appropriate field (middle), and hit the search button or press enter. This search engine is NOT case sensitive.

Use wild characters " ? " and " * " for efficient search:

? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network WPSWorm Perturb-Seq portal

Metabolite Overview

Abbreviation .....................................................	:	peptido_BAC
Name .....................................................	:	Peptidoglycan subunit of bacteria
Model ID .....................................................	:	CC0054
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	Not available
Formula .....................................................	:	C40H62N8O21
Charge .....................................................	:	-2
Localization .....................................................	:	Cytosol, Extracellular
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	peptido_EC, peptido_TB2, peptido_TB1
Other associations .....................................................	:	See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Not yet represented in WormPaths maps.

iCEL1314

Comments

Charge is based on matching BiGG compounds.

Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

DGR0007Name: Bacterial degradation Type: Degradation Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	BACName: Bacteria in diet Formula: X Charge: 0 click to see details on this item[e] + (6.0) atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item[c] + (6.0) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item[c]		(0.129212) phospholipid_BACName: phospholipid component of E. coli diet Formula: X Charge: 0 click to see details on this item[e] + (5.037126) protein_BACName: Protein component of bacterial diet Formula: X Charge: 0 click to see details on this item[e] + (0.027377) peptido_BACName: Peptidoglycan subunit of bacteria Formula: C40H62N8O21 Charge: -2 click to see details on this item[e] + (0.135796) glycogen_BACName: glycogen Formula: C6H10O5 Charge: 0 click to see details on this item[e] + soluble_BACName: Soluble pool in bacterial diet Formula: X Charge: 0 click to see details on this item[e] + (0.008331) lps_BACName: Lipopolysaccharide (bacteria) Formula: C171H297N4O88P2 Charge: -7 click to see details on this item[e] + (0.099745) dna_BACName: DNA component of bacterial diet Formula: X Charge: 0 click to see details on this item[e] + (0.636031) rna_BACName: RNA component of bacterial diet Formula: X Charge: 0 click to see details on this item[e] + (6.0) adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c] + (6.0) hName: H+ Formula: H Charge: 1 click to see details on this item[c] + (6.0) piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item[c]	Not applicable	Bacterial digestion
DGR0011Name: Bacterial peptidoglycan uptake Type: Degradation Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	peptido_BACName: Peptidoglycan subunit of bacteria Formula: C40H62N8O21 Charge: -2 click to see details on this item[e]		peptido_BACName: Peptidoglycan subunit of bacteria Formula: C40H62N8O21 Charge: -2 click to see details on this item[c]	Not applicable	Bacterial digestion
DGR0012Name: Bacterial peptidoglycan degradation Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	To be determined	[c] : peptido_BACName: Peptidoglycan subunit of bacteria Formula: C40H62N8O21 Charge: -2 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item + (8) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item		(2) acgamName: N-Acetyl-D-glucosamine Formula: C8H15NO6 Charge: 0 click to see details on this item + lac-DName: D-Lactate Formula: C3H5O3 Charge: -1 click to see details on this item + glu-LName: L-Glutamate Formula: C5H8NO4 Charge: -1 click to see details on this item + (3) ala-LName: L-Alanine Formula: C3H7NO2 Charge: 0 click to see details on this item + lys-LName: L-Lysine Formula: C6H15N2O2 Charge: 1 click to see details on this item + co2Name: CO2 Formula: CO2 Charge: 0 click to see details on this item	Not determined	Bacterial digestion
EXC0054Name: Peptidoglycan subunit of bacteria exchange Type: Exchange Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	peptido_BACName: Peptidoglycan subunit of bacteria Formula: C40H62N8O21 Charge: -2 click to see details on this item[e]			Not applicable	Exchange with the environment

The information and tools provided in this website are to be used for academic purposes only.