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Use wild characters " ? " and " * " for efficient search:
  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
PEAPathway Enrichment Analysis
WormClustClustering- and enrichment-based association of genes with the metabolic network WPSWorm Perturb-Seq portal
Metabolite Overview
Abbreviation ..................................................... : lystrna
Name ..................................................... : L-Lysine-tRNA (Lys), etc.L-Lysyl-tRNA, L-Lysyl-tRNA(Lys)
Model ID ..................................................... : C01931
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : C01931
Formula ..................................................... : C6H15N2O2R
Charge ..................................................... : +2
Localization ..................................................... : Mitochondria, Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : lystrna
Other associations ..................................................... : See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space ..................................................... 		: Not yet represented in WormPaths maps.
Comments
  • TRNA formula in BiGG was modified for mass balance.

    • Reactions
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.     		Pathway
    RC03658Name: L-Lysine:tRNALys ligase (AMP-forming)
    Type: Regular
    Location: Cytosol
    KEGG ID: R03658

    click to see details on this item
    6.1.1.6Name: lysine---tRNA ligase
    Other names: lysyl-tRNA synthetase, lysyl-transfer ribonucleate synthetase, lysyl-transfer RNA synthetase, L-lysine-transfer RNA ligase, lysine-tRNA synthetase, lysine translase

    click to see details on this item
    [c] : atpName: ATP
    Formula: C10H12N5O13P3
    Charge: -4




    click to see details on this item     + lys-LName: L-Lysine
    Formula: C6H15N2O2
    Charge: 1




    click to see details on this item     + trnalysName: tRNA(Lys)
    Formula: ROH
    Charge: 0




    click to see details on this item
    ampName: AMP
    Formula: C10H12N5O7P
    Charge: -2




    click to see details on this item     + lystrnaName: L-Lysine-tRNA (Lys)
    Formula: C6H15N2O2R
    Charge: 2




    click to see details on this item     + ppiName: Diphosphate
    Formula: HO7P2
    Charge: -3




    click to see details on this item
    kars-1
    Aminoacyl-tRNA biosynthesis
    RM03658Name: L-Lysine:tRNALys ligase (AMP-forming)
    Type: Regular
    Location: Mitochondria
    KEGG ID: R03658

    click to see details on this item
    6.1.1.6Name: lysine---tRNA ligase
    Other names: lysyl-tRNA synthetase, lysyl-transfer ribonucleate synthetase, lysyl-transfer RNA synthetase, L-lysine-transfer RNA ligase, lysine-tRNA synthetase, lysine translase

    click to see details on this item
    [m] : atpName: ATP
    Formula: C10H12N5O13P3
    Charge: -4




    click to see details on this item     + lys-LName: L-Lysine
    Formula: C6H15N2O2
    Charge: 1




    click to see details on this item     + trnalysName: tRNA(Lys)
    Formula: ROH
    Charge: 0




    click to see details on this item
    ampName: AMP
    Formula: C10H12N5O7P
    Charge: -2




    click to see details on this item     + lystrnaName: L-Lysine-tRNA (Lys)
    Formula: C6H15N2O2R
    Charge: 2




    click to see details on this item     + ppiName: Diphosphate
    Formula: HO7P2
    Charge: -3




    click to see details on this item
    kars-1
    Aminoacyl-tRNA biosynthesis
    RCC0170Name: Procollagen synthesis (unmodified protein)
    Type: Regular
    Location: Cytosol
    KEGG ID: NA

    click to see details on this item
    Not applicable
    [c] : (2.0) gtpName: GTP
    Formula: C10H12N5O14P3
    Charge: -4




    click to see details on this item     + (0.324) atpName: ATP
    Formula: C10H12N5O13P3
    Charge: -4




    click to see details on this item     + (2.324) h2oName: H2O
    Formula: H2O
    Charge: 0




    click to see details on this item     + (0.072072) alatrnaName: L-Alanyl-tRNA(Ala)
    Formula: C3H7NO2R
    Charge: 1




    click to see details on this item     + (0.048116) argtrnaName: L-Arginyl-tRNA(Arg)
    Formula: C6H15N4O2R
    Charge: 2




    click to see details on this item     + (0.033015) asntrnaName: L-Asparaginyl-tRNA(Asn)
    Formula: C4H8N2O3R
    Charge: 1




    click to see details on this item     + (0.049284) asptrnaName: L-Aspartyl-tRNA(Asp)
    Formula: C4H6NO4R
    Charge: 0




    click to see details on this item     + (0.027047) cystrnaName: L-Cysteinyl-tRNA(Cys)
    Formula: C3H7NO2SR
    Charge: 1




    click to see details on this item     + (0.049537) glutrnaName: L-Glutamyl-tRNA(Glu)
    Formula: C5H8NO4R
    Charge: 0




    click to see details on this item     + (0.046288) glntrnaName: L-Glutaminyl-tRNA(Gln)
    Formula: C5H10N2O3R
    Charge: 1




    click to see details on this item     + (0.195952) glytrnaName: Glycyl-tRNA(Gly)
    Formula: C2H5NO2R
    Charge: 1




    click to see details on this item     + (0.014203) histrnaName: L-Histidyl-tRNA(His)
    Formula: C6H9N3O2R
    Charge: 1




    click to see details on this item     + (0.027694) iletrnaName: L-Isoleucyl-tRNA(Ile)
    Formula: C6H13NO2R
    Charge: 1




    click to see details on this item     + (0.033232) leutrnaName: L-Leucyl-tRNA(Leu)
    Formula: C6H13NO2R
    Charge: 1




    click to see details on this item     + (0.036365) lystrnaName: L-Lysine-tRNA (Lys)
    Formula: C6H15N2O2R
    Charge: 2




    click to see details on this item     + (0.017249) mettrnaName: L-Methionyl-tRNA (Met)
    Formula: C5H11NO2SR
    Charge: 1




    click to see details on this item     + (0.017276) phetrnaName: L-Phenylalanyl-tRNA(Phe)
    Formula: C9H11NO2R
    Charge: 1




    click to see details on this item     + (0.167533) protrnaName: L-Prolyl-tRNA(Pro)
    Formula: C5H9NO2R
    Charge: 1




    click to see details on this item     + (0.051072) sertrnaName: L-Seryl-tRNA(Ser)
    Formula: C3H7NO3R
    Charge: 1




    click to see details on this item     + (0.042924) thrtrnaName: L-Threonyl-tRNA(Thr)
    Formula: C4H9NO3R
    Charge: 1




    click to see details on this item     + (0.004785) trptrnaName: L-Tryptophanyl-tRNA(Trp)
    Formula: C11H12N2O2R
    Charge: 1




    click to see details on this item     + (0.022921) tyrtrnaName: L-Tyrosyl-tRNA(Tyr)
    Formula: C9H11NO3R
    Charge: 1




    click to see details on this item     + (0.043435) valtrnaName: L-Valyl-tRNA(Val)
    Formula: C5H11NO2R
    Charge: 1




    click to see details on this item
    (0.921682) pcollg_restName: Procollagen (unmodified portion)
    Formula: X
    Charge: 0




    click to see details on this item     + (0.006239) pcollglysName: Procollagen L-lysine (to be modified)
    Formula: XH
    Charge: 1




    click to see details on this item     + (0.072079) pcollgproName: Procollagen L-proline (to be modified)
    Formula: XH
    Charge: 0




    click to see details on this item     + (2.0) gdpName: GDP
    Formula: C10H12N5O11P2
    Charge: -3




    click to see details on this item     + (0.324) adpName: ADP
    Formula: C10H12N5O10P2
    Charge: -3




    click to see details on this item     + (3.324) hName: H+
    Formula: H
    Charge: 1




    click to see details on this item     + (2.324) piName: Phosphate
    Formula: HO4P
    Charge: -2




    click to see details on this item     + (0.072072) trnaalaName: tRNA(Ala)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.048116) trnaargName: tRNA(Arg)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.033015) trnaasnName: tRNA(Asn)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.049284) trnaaspName: tRNA(Asp)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.027047) trnacysName: tRNA(Cys)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.049537) trnagluName: tRNA (Glu)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.046288) trnaglnName: tRNA(Gln)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.195952) trnaglyName: tRNA(Gly)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.014203) trnahisName: tRNA(His)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.027694) trnaileName: tRNA(Ile)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.033232) trnaleuName: tRNA(Leu)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.036365) trnalysName: tRNA(Lys)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.017249) trnametName: tRNA(Met)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.017276) trnapheName: tRNA(Phe)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.167533) trnaproName: tRNA(Pro)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.051072) trnaserName: tRNA(Ser)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.042924) trnathrName: tRNA(Thr)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.004785) trnatrpName: tRNA(Trp)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.022921) trnatyrName: tRNA(Tyr)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.043435) trnavalName: tRNA(Val)
    Formula: ROH
    Charge: 0




    click to see details on this item
    Not applicable
    Miscellaneous
    BIO0001Name: Protein synthesis (mitochondrial)
    Type: Biomass
    Location: Mitochondria
    KEGG ID: NA

    click to see details on this item
    Not applicable
    [m] : (2.0) gtpName: GTP
    Formula: C10H12N5O14P3
    Charge: -4




    click to see details on this item     + (0.324) atpName: ATP
    Formula: C10H12N5O13P3
    Charge: -4




    click to see details on this item     + (2.324) h2oName: H2O
    Formula: H2O
    Charge: 0




    click to see details on this item     + (0.111867) alatrnaName: L-Alanyl-tRNA(Ala)
    Formula: C3H7NO2R
    Charge: 1




    click to see details on this item     + (0.048846) argtrnaName: L-Arginyl-tRNA(Arg)
    Formula: C6H15N4O2R
    Charge: 2




    click to see details on this item     + (0.035405) asntrnaName: L-Asparaginyl-tRNA(Asn)
    Formula: C4H8N2O3R
    Charge: 1




    click to see details on this item     + (0.064946) asptrnaName: L-Aspartyl-tRNA(Asp)
    Formula: C4H6NO4R
    Charge: 0




    click to see details on this item     + (0.008665) cystrnaName: L-Cysteinyl-tRNA(Cys)
    Formula: C3H7NO2SR
    Charge: 1




    click to see details on this item     + (0.067386) glutrnaName: L-Glutamyl-tRNA(Glu)
    Formula: C5H8NO4R
    Charge: 0




    click to see details on this item     + (0.037694) glntrnaName: L-Glutaminyl-tRNA(Gln)
    Formula: C5H10N2O3R
    Charge: 1




    click to see details on this item     + (0.094618) glytrnaName: Glycyl-tRNA(Gly)
    Formula: C2H5NO2R
    Charge: 1




    click to see details on this item     + (0.01782) histrnaName: L-Histidyl-tRNA(His)
    Formula: C6H9N3O2R
    Charge: 1




    click to see details on this item     + (0.053231) iletrnaName: L-Isoleucyl-tRNA(Ile)
    Formula: C6H13NO2R
    Charge: 1




    click to see details on this item     + (0.082051) leutrnaName: L-Leucyl-tRNA(Leu)
    Formula: C6H13NO2R
    Charge: 1




    click to see details on this item     + (0.071622) lystrnaName: L-Lysine-tRNA (Lys)
    Formula: C6H15N2O2R
    Charge: 2




    click to see details on this item     + (0.020458) mettrnaName: L-Methionyl-tRNA (Met)
    Formula: C5H11NO2SR
    Charge: 1




    click to see details on this item     + (0.035592) phetrnaName: L-Phenylalanyl-tRNA(Phe)
    Formula: C9H11NO2R
    Charge: 1




    click to see details on this item     + (0.043238) protrnaName: L-Prolyl-tRNA(Pro)
    Formula: C5H9NO2R
    Charge: 1




    click to see details on this item     + (0.045815) sertrnaName: L-Seryl-tRNA(Ser)
    Formula: C3H7NO3R
    Charge: 1




    click to see details on this item     + (0.049868) thrtrnaName: L-Threonyl-tRNA(Thr)
    Formula: C4H9NO3R
    Charge: 1




    click to see details on this item     + (0.008944) trptrnaName: L-Tryptophanyl-tRNA(Trp)
    Formula: C11H12N2O2R
    Charge: 1




    click to see details on this item     + (0.026832) tyrtrnaName: L-Tyrosyl-tRNA(Tyr)
    Formula: C9H11NO3R
    Charge: 1




    click to see details on this item     + (0.075105) valtrnaName: L-Valyl-tRNA(Val)
    Formula: C5H11NO2R
    Charge: 1




    click to see details on this item
    prot_mitoName: Mitochondrial protein
    Formula: X
    Charge: 0




    click to see details on this item     + (2.0) gdpName: GDP
    Formula: C10H12N5O11P2
    Charge: -3




    click to see details on this item     + (0.324) adpName: ADP
    Formula: C10H12N5O10P2
    Charge: -3




    click to see details on this item     + (3.324) hName: H+
    Formula: H
    Charge: 1




    click to see details on this item     + (2.324) piName: Phosphate
    Formula: HO4P
    Charge: -2




    click to see details on this item     + (0.111867) trnaalaName: tRNA(Ala)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.048846) trnaargName: tRNA(Arg)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.035405) trnaasnName: tRNA(Asn)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.064946) trnaaspName: tRNA(Asp)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.008665) trnacysName: tRNA(Cys)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.067386) trnagluName: tRNA (Glu)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.037694) trnaglnName: tRNA(Gln)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.094618) trnaglyName: tRNA(Gly)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.01782) trnahisName: tRNA(His)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.053231) trnaileName: tRNA(Ile)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.082051) trnaleuName: tRNA(Leu)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.071622) trnalysName: tRNA(Lys)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.020458) trnametName: tRNA(Met)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.035592) trnapheName: tRNA(Phe)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.043238) trnaproName: tRNA(Pro)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.045815) trnaserName: tRNA(Ser)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.049868) trnathrName: tRNA(Thr)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.008944) trnatrpName: tRNA(Trp)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.026832) trnatyrName: tRNA(Tyr)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.075105) trnavalName: tRNA(Val)
    Formula: ROH
    Charge: 0




    click to see details on this item
    Not applicable
    Biomass assembly
    BIO0002Name: Protein synthesis (cytoplasmic)
    Type: Biomass
    Location: Cytosol
    KEGG ID: NA

    click to see details on this item
    Not applicable
    [c] : (2.0) gtpName: GTP
    Formula: C10H12N5O14P3
    Charge: -4




    click to see details on this item     + (0.324) atpName: ATP
    Formula: C10H12N5O13P3
    Charge: -4




    click to see details on this item     + (2.324) h2oName: H2O
    Formula: H2O
    Charge: 0




    click to see details on this item     + (0.12769) alatrnaName: L-Alanyl-tRNA(Ala)
    Formula: C3H7NO2R
    Charge: 1




    click to see details on this item     + (0.042387) argtrnaName: L-Arginyl-tRNA(Arg)
    Formula: C6H15N4O2R
    Charge: 2




    click to see details on this item     + (0.025739) asntrnaName: L-Asparaginyl-tRNA(Asn)
    Formula: C4H8N2O3R
    Charge: 1




    click to see details on this item     + (0.084822) asptrnaName: L-Aspartyl-tRNA(Asp)
    Formula: C4H6NO4R
    Charge: 0




    click to see details on this item     + (0.000208) cystrnaName: L-Cysteinyl-tRNA(Cys)
    Formula: C3H7NO2SR
    Charge: 1




    click to see details on this item     + (0.085568) glutrnaName: L-Glutamyl-tRNA(Glu)
    Formula: C5H8NO4R
    Charge: 0




    click to see details on this item     + (0.026184) glntrnaName: L-Glutaminyl-tRNA(Gln)
    Formula: C5H10N2O3R
    Charge: 1




    click to see details on this item     + (0.074691) glytrnaName: Glycyl-tRNA(Gly)
    Formula: C2H5NO2R
    Charge: 1




    click to see details on this item     + (0.017927) histrnaName: L-Histidyl-tRNA(His)
    Formula: C6H9N3O2R
    Charge: 1




    click to see details on this item     + (0.052143) iletrnaName: L-Isoleucyl-tRNA(Ile)
    Formula: C6H13NO2R
    Charge: 1




    click to see details on this item     + (0.079867) leutrnaName: L-Leucyl-tRNA(Leu)
    Formula: C6H13NO2R
    Charge: 1




    click to see details on this item     + (0.079083) lystrnaName: L-Lysine-tRNA (Lys)
    Formula: C6H15N2O2R
    Charge: 2




    click to see details on this item     + (0.012181) mettrnaName: L-Methionyl-tRNA (Met)
    Formula: C5H11NO2SR
    Charge: 1




    click to see details on this item     + (0.036544) phetrnaName: L-Phenylalanyl-tRNA(Phe)
    Formula: C9H11NO2R
    Charge: 1




    click to see details on this item     + (0.045145) protrnaName: L-Prolyl-tRNA(Pro)
    Formula: C5H9NO2R
    Charge: 1




    click to see details on this item     + (0.051284) sertrnaName: L-Seryl-tRNA(Ser)
    Formula: C3H7NO3R
    Charge: 1




    click to see details on this item     + (0.052305) thrtrnaName: L-Threonyl-tRNA(Thr)
    Formula: C4H9NO3R
    Charge: 1




    click to see details on this item     + (0.007259) trptrnaName: L-Tryptophanyl-tRNA(Trp)
    Formula: C11H12N2O2R
    Charge: 1




    click to see details on this item     + (0.027882) tyrtrnaName: L-Tyrosyl-tRNA(Tyr)
    Formula: C9H11NO3R
    Charge: 1




    click to see details on this item     + (0.071091) valtrnaName: L-Valyl-tRNA(Val)
    Formula: C5H11NO2R
    Charge: 1




    click to see details on this item
    prot_otherName: Non-mitochondrial protein
    Formula: X
    Charge: 0




    click to see details on this item     + (2.0) gdpName: GDP
    Formula: C10H12N5O11P2
    Charge: -3




    click to see details on this item     + (0.324) adpName: ADP
    Formula: C10H12N5O10P2
    Charge: -3




    click to see details on this item     + (3.324) hName: H+
    Formula: H
    Charge: 1




    click to see details on this item     + (2.324) piName: Phosphate
    Formula: HO4P
    Charge: -2




    click to see details on this item     + (0.12769) trnaalaName: tRNA(Ala)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.042387) trnaargName: tRNA(Arg)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.025739) trnaasnName: tRNA(Asn)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.084822) trnaaspName: tRNA(Asp)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.000208) trnacysName: tRNA(Cys)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.085568) trnagluName: tRNA (Glu)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.026184) trnaglnName: tRNA(Gln)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.074691) trnaglyName: tRNA(Gly)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.017927) trnahisName: tRNA(His)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.052143) trnaileName: tRNA(Ile)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.079867) trnaleuName: tRNA(Leu)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.079083) trnalysName: tRNA(Lys)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.012181) trnametName: tRNA(Met)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.036544) trnapheName: tRNA(Phe)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.045145) trnaproName: tRNA(Pro)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.051284) trnaserName: tRNA(Ser)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.052305) trnathrName: tRNA(Thr)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.007259) trnatrpName: tRNA(Trp)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.027882) trnatyrName: tRNA(Tyr)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.071091) trnavalName: tRNA(Val)
    Formula: ROH
    Charge: 0




    click to see details on this item
    Not applicable
    Biomass assembly
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