WormFlux: mechanistic analysis of C. elegans metabolism

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Use wild characters " ? " and " * " for efficient search:

? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Metabolite Overview

Abbreviation .....................................................	:	soluble_BAC
Name .....................................................	:	Soluble pool in bacterial diet
Model ID .....................................................	:	CC0072
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	Not available
Formula .....................................................	:	X
Charge .....................................................	:	0
Localization .....................................................	:	Extracellular
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	Not available
Other associations .....................................................	:	See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Not yet represented in WormPaths maps.

iCEL1314

Comments

Charge does not matter.

Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

DGR0006Name: Bacterial soluble pool composition Type: Degradation Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	[e] : soluble_BACName: Soluble pool in bacterial diet Formula: X Charge: 0 click to see details on this item		(0.00625) mobdName: Molybdate Formula: MoO4 Charge: -2 click to see details on this item + (0.0002) q8Name: Ubiquinone-8 Formula: C49H74O4 Charge: 0 click to see details on this item + (0.0002) thmName: Thiamin Formula: C12H17N4OS Charge: 1 click to see details on this item + (0.000903) thmppName: Thiamine diphosphate Formula: C12H16N4O7P2S Charge: -2 click to see details on this item + (0.0002) adocblName: Adenosylcobalamin Formula: C72H100CoN18O17P Charge: 0 click to see details on this item + (0.0002) selcysName: Selenocysteine Formula: C3H7NO2Se Charge: 0 click to see details on this item + (0.0002) cbl1Name: Cob(I)alamin Formula: C62H88CoN13O14P Charge: -1 click to see details on this item + (0.000443) ribflvName: Riboflavin Formula: C17H20N4O6 Charge: 0 click to see details on this item + (0.0002) phemeName: Protoheme Formula: C34H30FeN4O4 Charge: 0 click to see details on this item + (0.0002) pydxnName: Pyridoxine Formula: C8H11NO3 Charge: 0 click to see details on this item + (0.000893) fe2Name: Fe2+ Formula: Fe Charge: 2 click to see details on this item + (0.0002) pydamName: Pyridoxamine Formula: C8H13N2O2 Charge: 1 click to see details on this item + (0.001172) fmnName: FMN Formula: C17H19N4O9P Charge: -2 click to see details on this item + (0.0002) folName: Folate Formula: C19H18N7O6 Charge: -1 click to see details on this item + (0.004018) acornName: N2-Acetyl-L-ornithine Formula: C7H14N2O3 Charge: 0 click to see details on this item + (0.0002) pnto-RName: (R)-Pantothenate Formula: C9H16NO5 Charge: -1 click to see details on this item + (0.002774) fadName: Flavin adenine dinucleotide oxidized Formula: C27H31N9O15P2 Charge: -2 click to see details on this item + (0.0002) pydxName: Pyridoxal Formula: C8H9NO3 Charge: 0 click to see details on this item + (0.0002) tmaName: trimethylamine Formula: C3H10N Charge: 1 click to see details on this item + (0.0002) acserName: O-Acetyl-L-serine Formula: C5H9NO4 Charge: 0 click to see details on this item	Not applicable	Bacterial digestion
DGR0007Name: Bacterial degradation Type: Degradation Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	BACName: Bacteria in diet Formula: X Charge: 0 click to see details on this item[e] + (6.0) atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item[c] + (6.0) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item[c]		(0.129212) phospholipid_BACName: phospholipid component of E. coli diet Formula: X Charge: 0 click to see details on this item[e] + (5.037126) protein_BACName: Protein component of bacterial diet Formula: X Charge: 0 click to see details on this item[e] + (0.027377) peptido_BACName: Peptidoglycan subunit of bacteria Formula: C40H62N8O21 Charge: -2 click to see details on this item[e] + (0.135796) glycogen_BACName: glycogen Formula: C6H10O5 Charge: 0 click to see details on this item[e] + soluble_BACName: Soluble pool in bacterial diet Formula: X Charge: 0 click to see details on this item[e] + (0.008331) lps_BACName: Lipopolysaccharide (bacteria) Formula: C171H297N4O88P2 Charge: -7 click to see details on this item[e] + (0.099745) dna_BACName: DNA component of bacterial diet Formula: X Charge: 0 click to see details on this item[e] + (0.636031) rna_BACName: RNA component of bacterial diet Formula: X Charge: 0 click to see details on this item[e] + (6.0) adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c] + (6.0) hName: H+ Formula: H Charge: 1 click to see details on this item[c] + (6.0) piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item[c]	Not applicable	Bacterial digestion
EXC0072Name: Soluble pool in bacterial diet exchange Type: Exchange Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	soluble_BACName: Soluble pool in bacterial diet Formula: X Charge: 0 click to see details on this item[e]			Not applicable	Exchange with the environment

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