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Use wild characters " ? " and " * " for efficient search:
  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
PEAPathway Enrichment Analysis
WormClustClustering- and enrichment-based association of genes with the metabolic network WPSWorm Perturb-Seq portal
Metabolite Overview
Abbreviation ..................................................... : sertrna_sec
Name ..................................................... : L-Seryl-tRNA(Sec)
Model ID ..................................................... : C06481
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : C06481
Formula ..................................................... : C3H7NO3R
Charge ..................................................... : +1
Localization ..................................................... : Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : sertrna(sec)
Other associations ..................................................... : See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space ..................................................... 		: Selenocompound metabolism (c)
Comments
  • TRNA formula in BiGG was modified for mass balance.

    • Reactions
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.     		Pathway
    RC08218Name: L-serine:tRNASec ligase (AMP-forming)
    Type: Regular
    Location: Cytosol
    KEGG ID: R08218

    click to see details on this item
    6.1.1.11Name: serine---tRNA ligase
    Other names: seryl-tRNA synthetase, SerRS, seryl-transfer ribonucleate synthetase, seryl-transfer RNA synthetase, seryl-transfer ribonucleic acid synthetase, serine translase

    click to see details on this item
    [c] : atpName: ATP
    Formula: C10H12N5O13P3
    Charge: -4




    click to see details on this item     + ser-LName: L-Serine
    Formula: C3H7NO3
    Charge: 0




    click to see details on this item     + trnasecName: tRNA(Sec)
    Formula: ROH
    Charge: 0




    click to see details on this item
    ampName: AMP
    Formula: C10H12N5O7P
    Charge: -2




    click to see details on this item     + ppiName: Diphosphate
    Formula: HO7P2
    Charge: -3




    click to see details on this item     + sertrna_secName: L-Seryl-tRNA(Sec)
    Formula: C3H7NO3R
    Charge: 1




    click to see details on this item
    sars-1
    Aminoacyl-tRNA biosynthesis
    RC08223Name: L-seryl-tRNA(Sec) kinase
    Type: Regular
    Location: Cytosol
    KEGG ID: R08223

    click to see details on this item
    2.7.1.164Name: O-phosphoseryl-tRNASec kinase
    Other names: PSTK, phosphoseryl-tRNA[Ser]Sec kinase, phosphoseryl-tRNASec kinase

    click to see details on this item
    [c] : sertrna_secName: L-Seryl-tRNA(Sec)
    Formula: C3H7NO3R
    Charge: 1




    click to see details on this item     + atpName: ATP
    Formula: C10H12N5O13P3
    Charge: -4




    click to see details on this item
    serptrnaName: O-Phosphoseryl-tRNA(Sec)
    Formula: C3H7NO6PR
    Charge: 0




    click to see details on this item     + adpName: ADP
    Formula: C10H12N5O10P2
    Charge: -3




    click to see details on this item
    pstk-1
    Selenocompound metabolism
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