WormFlux: mechanistic analysis of C. elegans metabolism

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Use wild characters " ? " and " * " for efficient search:

? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Metabolite Overview

Abbreviation .....................................................	:	protein_BAC
Name .....................................................	:	Protein component of bacterial diet
Model ID .....................................................	:	CC0051
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	Not available
Formula .....................................................	:	X
Charge .....................................................	:	0
Localization .....................................................	:	Cytosol, Extracellular
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	Not available
Other associations .....................................................	:	See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Not yet represented in WormPaths maps.

iCEL1314

Comments

Charge does not matter.

Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

DGR0001Name: Bacterial peptide degradation Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	3.4.23.-Name: bacterial peptide degradation click to see details on this item 3.4.-.-Name: bacterial peptide degradation Other names: protein lysine peptidase click to see details on this item	[c] : protein_BACName: Protein component of bacterial diet Formula: X Charge: 0 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item		(0.096044) ala-LName: L-Alanine Formula: C3H7NO2 Charge: 0 click to see details on this item + (0.055304) arg-LName: L-Arginine Formula: C6H15N4O2 Charge: 1 click to see details on this item + (0.04507) asn-LName: L-Asparagine Formula: C4H8N2O3 Charge: 0 click to see details on this item + (0.04507) asp-LName: L-Aspartate Formula: C4H6NO4 Charge: -1 click to see details on this item + (0.017123) cys-LName: L-Cysteine Formula: C3H7NO2S Charge: 0 click to see details on this item + (0.049203) glu-LName: L-Glutamate Formula: C5H8NO4 Charge: -1 click to see details on this item + (0.049203) gln-LName: L-Glutamine Formula: C5H10N2O3 Charge: 0 click to see details on this item + (0.114544) glyName: Glycine Formula: C2H5NO2 Charge: 0 click to see details on this item + (0.017713) his-LName: L-Histidine Formula: C6H9N3O2 Charge: 0 click to see details on this item + (0.05432) ile-LName: L-Isoleucine Formula: C6H13NO2 Charge: 0 click to see details on this item + (0.084235) leu-LName: L-Leucine Formula: C6H13NO2 Charge: 0 click to see details on this item + (0.064161) lys-LName: L-Lysine Formula: C6H15N2O2 Charge: 1 click to see details on this item + (0.028735) met-LName: L-Methionine Formula: C5H11NO2S Charge: 0 click to see details on this item + (0.034639) phe-LName: L-Phenylalanine Formula: C9H11NO2 Charge: 0 click to see details on this item + (0.04133) pro-LName: L-Proline Formula: C5H9NO2 Charge: 0 click to see details on this item + (0.040346) ser-LName: L-Serine Formula: C3H7NO3 Charge: 0 click to see details on this item + (0.047432) thr-LName: L-Threonine Formula: C4H9NO3 Charge: 0 click to see details on this item + (0.010628) trp-LName: L-Tryptophan Formula: C11H12N2O2 Charge: 0 click to see details on this item + (0.025782) tyr-LName: L-Tyrosine Formula: C9H11NO3 Charge: 0 click to see details on this item + (0.079118) val-LName: L-Valine Formula: C5H11NO2 Charge: 0 click to see details on this item	asp-1 \| asp-2 \| asp-3 \| asp-5 \| K12H4.7	Bacterial digestion
DGR0007Name: Bacterial degradation Type: Degradation Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	BACName: Bacteria in diet Formula: X Charge: 0 click to see details on this item[e] + (6.0) atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item[c] + (6.0) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item[c]		(0.129212) phospholipid_BACName: phospholipid component of E. coli diet Formula: X Charge: 0 click to see details on this item[e] + (5.037126) protein_BACName: Protein component of bacterial diet Formula: X Charge: 0 click to see details on this item[e] + (0.027377) peptido_BACName: Peptidoglycan subunit of bacteria Formula: C40H62N8O21 Charge: -2 click to see details on this item[e] + (0.135796) glycogen_BACName: glycogen Formula: C6H10O5 Charge: 0 click to see details on this item[e] + soluble_BACName: Soluble pool in bacterial diet Formula: X Charge: 0 click to see details on this item[e] + (0.008331) lps_BACName: Lipopolysaccharide (bacteria) Formula: C171H297N4O88P2 Charge: -7 click to see details on this item[e] + (0.099745) dna_BACName: DNA component of bacterial diet Formula: X Charge: 0 click to see details on this item[e] + (0.636031) rna_BACName: RNA component of bacterial diet Formula: X Charge: 0 click to see details on this item[e] + (6.0) adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item[c] + (6.0) hName: H+ Formula: H Charge: 1 click to see details on this item[c] + (6.0) piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item[c]	Not applicable	Bacterial digestion
DGR0008Name: Bacterial peptide uptake Type: Degradation Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	protein_BACName: Protein component of bacterial diet Formula: X Charge: 0 click to see details on this item[e]		protein_BACName: Protein component of bacterial diet Formula: X Charge: 0 click to see details on this item[c]	Not applicable	Bacterial digestion
EXC0051Name: Protein component of bacterial diet exchange Type: Exchange Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	protein_BACName: Protein component of bacterial diet Formula: X Charge: 0 click to see details on this item[e]			Not applicable	Exchange with the environment

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