Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Metabolite Overview

Abbreviation .....................................................	:	cytd
Name .....................................................	:	Cytidine
Model ID .....................................................	:	C00475
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C00475
Formula .....................................................	:	C9H13N3O5
Charge .....................................................	:	0
Localization .....................................................	:	Mitochondria, Cytosol, Extracellular
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	cytd
Other associations .....................................................	:	See reaction table below (7 reactions in total)
In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Pyrimidine metabolism (c,m)

iCEL1314

Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&). I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme). & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme). If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC00511Name: Cytidine-5-monophosphate phosphohydrolase Type: Regular Location: Cytosol KEGG ID: R00511 click to see details on this item	3.1.3.5Name: 5'-nucleotidase Other names: uridine 5'-nucleotidase, 5'-adenylic phosphatase, adenosine 5'-phosphatase, AMP phosphatase, adenosine monophosphatase, 5'-mononucleotidase, AMPase, UMPase, snake venom 5'-nucleotidase, thimidine monophosphate nucleotidase, 5'-AMPase, 5'-AMP nucleotidase, AMP phosphohydrolase, IMP 5'-nucleotidase click to see details on this item	[c] : cmpName: CMP Formula: C9H12N3O8P Charge: -2 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item		cytdName: Cytidine Formula: C9H13N3O5 Charge: 0 click to see details on this item + piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item	F25B5.3 | Y10G11A.1 | Y71H10B.1	Pyrimidine metabolism
RC00513Name: ATP:cytidine 5-phosphotransferase Type: Regular Location: Cytosol KEGG ID: R00513 click to see details on this item	2.7.1.48Name: uridine kinase Other names: pyrimidine ribonucleoside kinase, uridine-cytidine kinase, uridine kinase (phosphorylating), uridine phosphokinase click to see details on this item	[c] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + cytdName: Cytidine Formula: C9H13N3O5 Charge: 0 click to see details on this item		adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + cmpName: CMP Formula: C9H12N3O8P Charge: -2 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item	B0001.4 | F19B6.1	Pyrimidine metabolism
RC01878Name: Cytidine aminohydrolase Type: Regular Location: Cytosol KEGG ID: R01878 click to see details on this item	3.5.4.5Name: cytidine deaminase Other names: cytosine nucleoside deaminase, (deoxy)cytidine deaminase, cdd (gene name), CDA (gene name) click to see details on this item	[c] : cytdName: Cytidine Formula: C9H13N3O5 Charge: 0 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item		nh4Name: Ammonium Formula: H4N Charge: 1 click to see details on this item + uriName: Uridine Formula: C9H12N2O6 Charge: 0 click to see details on this item	cdd-1 | cdd-2	Pyrimidine metabolism
RM00513Name: ATP:cytidine 5-phosphotransferase Type: Regular Location: Mitochondria KEGG ID: R00513 click to see details on this item	2.7.1.48Name: uridine kinase Other names: pyrimidine ribonucleoside kinase, uridine-cytidine kinase, uridine kinase (phosphorylating), uridine phosphokinase click to see details on this item	[m] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + cytdName: Cytidine Formula: C9H13N3O5 Charge: 0 click to see details on this item		adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + cmpName: CMP Formula: C9H12N3O8P Charge: -2 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item	F19B6.1	Pyrimidine metabolism
TCE0784Name: Cytidine transport Type: Transport Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	cytdName: Cytidine Formula: C9H13N3O5 Charge: 0 click to see details on this item[e]		cytdName: Cytidine Formula: C9H13N3O5 Charge: 0 click to see details on this item[c]	Not determined	Transport
TCM0173Name: Cytidine transport Type: Transport Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	cytdName: Cytidine Formula: C9H13N3O5 Charge: 0 click to see details on this item[c]		cytdName: Cytidine Formula: C9H13N3O5 Charge: 0 click to see details on this item[m]	Not determined	Transport
EX00475Name: Cytidine exchange Type: Exchange Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	cytdName: Cytidine Formula: C9H13N3O5 Charge: 0 click to see details on this item[e]			Not applicable	Exchange with the environment

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