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Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
WormClustClustering- and enrichment-based association of genes with the metabolic network
Pathway Overview
Name ..................................................... : Propionate degradation
Related pathway (?) The pathway found in other databases to which this pathway is related. ..................................................... : ERROR
Number of reactions ..................................................... : 19

In WormPaths (?) If the pathway is available as a WormPaths map you will find the name and link of map here. ..................................................... : Propionate degradation
Reactions (?) Click to see these reactions in the related KEGG pathway (only enzymes that are represented in kegg are highlighted).
ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses. 		Pathway
RC01000Name: 2-Hydroxybutyrate:NAD+ oxidoreductase
Type: Regular
Location: Cytosol
KEGG ID: R01000

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1.1.1.27Name: L-lactate dehydrogenase
Other names: lactic acid dehydrogenase, L(+)-nLDH, L-(+)-lactate dehydrogenase, L-lactic dehydrogenase, L-lactic acid dehydrogenase, lactate dehydrogenase, lactate dehydrogenase NAD+-dependent, lactic dehydrogenase, NAD+-lactate dehydrogenase

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[c] : 2hbName: 2-Hydroxybutyrate
Formula: C4H7O3
Charge: -1




click to see details on this item + nadName: Nicotinamide adenine dinucleotide
Formula: C21H26N7O14P2
Charge: -1




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2obutName: 2-Oxobutanoate
Formula: C4H5O3
Charge: -1




click to see details on this item + hName: H+
Formula: H
Charge: 1




click to see details on this item + nadhName: Nicotinamide adenine dinucleotide - reduced
Formula: C21H27N7O14P2
Charge: -2




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ldh-1
Propionate degradation
RM00705Name: 3-Oxopropanoate:NAD+ oxidoreductase (decarboxylating, CoA-acetylating)
Type: Regular
Location: Mitochondria
KEGG ID: R00705

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1.2.1.18Name: malonate-semialdehyde dehydrogenase (acetylating)
Other names: malonic semialdehyde oxidative decarboxylase

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1.2.1.27Name: methylmalonate-semialdehyde dehydrogenase (acylating)
Other names: MSDH, MMSA dehydrogenase

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[m] : coaName: Coenzyme A
Formula: C21H32N7O16P3S
Charge: -4




click to see details on this item + msaName: Malonate semialdehyde
Formula: C3H3O3
Charge: -1




click to see details on this item + nadName: Nicotinamide adenine dinucleotide
Formula: C21H26N7O14P2
Charge: -1




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accoaName: Acetyl-CoA
Formula: C23H34N7O17P3S
Charge: -4




click to see details on this item + co2Name: CO2
Formula: CO2
Charge: 0




click to see details on this item + nadhName: Nicotinamide adenine dinucleotide - reduced
Formula: C21H27N7O14P2
Charge: -2




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alh-8
Propionate degradation
RM00706Name: 3-Oxopropanoate:NADP+ oxidoreductase (decarboxylating, CoA-acetylating)
Type: Regular
Location: Mitochondria
KEGG ID: R00706

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1.2.1.18Name: malonate-semialdehyde dehydrogenase (acetylating)
Other names: malonic semialdehyde oxidative decarboxylase

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[m] : coaName: Coenzyme A
Formula: C21H32N7O16P3S
Charge: -4




click to see details on this item + msaName: Malonate semialdehyde
Formula: C3H3O3
Charge: -1




click to see details on this item + nadpName: Nicotinamide adenine dinucleotide phosphate
Formula: C21H25N7O17P3
Charge: -3




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accoaName: Acetyl-CoA
Formula: C23H34N7O17P3S
Charge: -4




click to see details on this item + co2Name: CO2
Formula: CO2
Charge: 0




click to see details on this item + nadphName: Nicotinamide adenine dinucleotide phosphate - reduced
Formula: C21H26N7O17P3
Charge: -4




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alh-8
Propionate degradation
RM00908Name: beta-alanine:2-oxoglutarate aminotransferase
Type: Regular
Location: Mitochondria
KEGG ID: R00908

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2.6.1.19Name: 4-aminobutyrate---2-oxoglutarate transaminase
Other names: beta-alanine-oxoglutarate transaminase, aminobutyrate aminotransferase (ambiguous), beta-alanine aminotransferase, beta-alanine-oxoglutarate aminotransferase, gamma-aminobutyrate aminotransaminase (ambiguous), gamma-aminobutyrate transaminase (ambiguous), gamma-aminobutyrate-alpha-ketoglutarate aminotransferase, gamma-aminobutyrate-alpha-ketoglutarate transaminase, gamma-aminobutyrate:alpha-oxoglutarate aminotransferase, gamma-aminobutyric acid aminotransferase (ambiguous), gamma-aminobutyric acid transaminase (ambiguous), gamma-aminobutyric acid-alpha-ketoglutarate transaminase, gamma-aminobutyric acid-alpha-ketoglutaric acid aminotransferase, gamma-aminobutyric acid-2-oxoglutarate transaminase, gamma-aminobutyric transaminase (ambiguous), 4-aminobutyrate aminotransferase (ambiguous), 4-aminobutyrate-2-ketoglutarate aminotransferase, 4-aminobutyrate-2-oxoglutarate aminotransferase, 4-aminobutyrate-2-oxoglutarate transaminase, 4-aminobutyric acid 2-ketoglutaric acid aminotransferase, 4-aminobutyric acid aminotransferase (ambiguous), aminobutyrate transaminase (ambiguous), GABA aminotransferase (ambiguous), GABA transaminase (ambiguous), GABA transferase, GABA-alpha-ketoglutarate aminotransferase, GABA-alpha-ketoglutarate transaminase, GABA-alpha-ketoglutaric acid transaminase, GABA-alpha-oxoglutarate aminotransferase, GABA-2-oxoglutarate aminotransferase, GABA-2-oxoglutarate transaminase, GABA-oxoglutarate aminotransferase, GABA-oxoglutarate transaminase, glutamate-succinic semialdehyde transaminase, GabT

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[m] : akgName: 2-Oxoglutarate
Formula: C5H4O5
Charge: -2




click to see details on this item + ala-BName: beta-Alanine
Formula: C3H7NO2
Charge: 0




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glu-LName: L-Glutamate
Formula: C5H8NO4
Charge: -1




click to see details on this item + msaName: Malonate semialdehyde
Formula: C3H3O3
Charge: -1




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gta-1
Propionate degradation
RM03045Name: 3-Hydroxypropionyl-CoA hydro-lyase
Type: Regular
Location: Mitochondria
KEGG ID: R03045

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4.2.1.17Name: enoyl-CoA hydratase
Other names: enoyl hydrase, unsaturated acyl-CoA hydratase, beta-hydroxyacyl-CoA dehydrase, beta-hydroxyacid dehydrase, hydratase, enoyl coenzyme A, acyl coenzyme A hydrase, crotonase, crotonyl hydrase, 2-octenoyl coenzyme A hydrase, enoyl coenzyme A hydratase, 2-enoyl-CoA hydratase, short-chain enoyl-CoA hydratase, ECH, trans-2-enoyl-CoA hydratase, enoyl coenzyme A hydrase (D), enoyl coenzyme A hydrase (L), short chain enoyl coenzyme A hydratase, D-3-hydroxyacyl-CoA dehydratase, enol-CoA hydratase

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[m] : h2oName: H2O
Formula: H2O
Charge: 0




click to see details on this item + prpncoaName: Propenoyl-CoA
Formula: C24H34N7O17P3S
Charge: -4




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3hpcoaName: 3-Hydroxypropionyl-CoA
Formula: C24H36N7O18P3S
Charge: -4




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ech-6
Propionate degradation
RM04432Name: Propanoyl-CoA:(acceptor) 2,3-oxidoreductase
Type: Regular
Location: Mitochondria
KEGG ID: R04432

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1.3.8.1Name: short-chain acyl-CoA dehydrogenase
Other names: butyryl-CoA dehydrogenase, butanoyl-CoA dehydrogenase, butyryl dehydrogenase, unsaturated acyl-CoA reductase, ethylene reductase, enoyl-coenzyme A reductase, unsaturated acyl coenzyme A reductase, butyryl coenzyme A dehydrogenase, short-chain acyl CoA dehydrogenase, short-chain acyl-coenzyme A dehydrogenase, 3-hydroxyacyl CoA reductase, butanoyl-CoA:(acceptor) 2,3-oxidoreductase, ACADS (gene name).

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[m] : etfoxName: Electron transfer flavoprotein oxidized
Formula: R
Charge: 0




click to see details on this item + ppcoaName: Propanoyl-CoA
Formula: C24H36N7O17P3S
Charge: -4




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etfrdName: Electron transfer flavoprotein reduced
Formula: RH2
Charge: 0




click to see details on this item + prpncoaName: Propenoyl-CoA
Formula: C24H34N7O17P3S
Charge: -4




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acdh-1
Propionate degradation
RCC0022Name: Propionyladenylate:CoA propionyltransferase; ATP:propanoate adenylyltransferase
Type: Regular
Location: Cytosol
KEGG ID: R00926;R01354

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6.2.1.1Name: acetate---CoA ligase
Other names: acetyl-CoA synthetase, acetyl activating enzyme, acetate thiokinase, acyl-activating enzyme, acetyl coenzyme A synthetase, acetic thiokinase, acetyl CoA ligase, acetyl CoA synthase, acetyl-coenzyme A synthase, short chain fatty acyl-CoA synthetase, short-chain acyl-coenzyme A synthetase, ACS

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[c] : atpName: ATP
Formula: C10H12N5O13P3
Charge: -4




click to see details on this item + coaName: Coenzyme A
Formula: C21H32N7O16P3S
Charge: -4




click to see details on this item + ppaName: Propionate (n-C3:0)
Formula: C3H5O2
Charge: -1




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ampName: AMP
Formula: C10H12N5O7P
Charge: -2




click to see details on this item + ppcoaName: Propanoyl-CoA
Formula: C24H36N7O17P3S
Charge: -4




click to see details on this item + ppiName: Diphosphate
Formula: HO7P2
Charge: -3




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acs-19
Propionate degradation
RM01608Name: 3-hydroxypropionate dehydrogenase
Type: Regular
Location: Mitochondria
KEGG ID: R01608

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1.1.1.59Name: 3-hydroxypropionate dehydrogenase

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[m] : 3hppName: 3-Hydroxypropanoate
Formula: C3H5O3
Charge: -1




click to see details on this item + nadName: Nicotinamide adenine dinucleotide
Formula: C21H26N7O14P2
Charge: -1




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hName: H+
Formula: H
Charge: 1




click to see details on this item + msaName: Malonate semialdehyde
Formula: C3H3O3
Charge: -1




click to see details on this item + nadhName: Nicotinamide adenine dinucleotide - reduced
Formula: C21H27N7O14P2
Charge: -2




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hphd-1
Propionate degradation
RM03158Name: 3-Hydroxypropionyl-CoA hydrolase
Type: Regular
Location: Mitochondria
KEGG ID: R03158

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3.1.2.4Name: 3-hydroxyisobutyryl-CoA hydrolase
Other names: 3-hydroxy-isobutyryl CoA hydrolase, HIB CoA deacylase

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[m] : 3hpcoaName: 3-Hydroxypropionyl-CoA
Formula: C24H36N7O18P3S
Charge: -4




click to see details on this item + h2oName: H2O
Formula: H2O
Charge: 0




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3hppName: 3-Hydroxypropanoate
Formula: C3H5O3
Charge: -1




click to see details on this item + coaName: Coenzyme A
Formula: C21H32N7O16P3S
Charge: -4




click to see details on this item + hName: H+
Formula: H
Charge: 1




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hach-1
Propionate degradation
RMC0133Name: branched-chain 2-oxo acid dehydrogenase
Type: Regular
Location: Mitochondria
KEGG ID: NA

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1.2.4.4Name: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)
Other names: 2-oxoisocaproate dehydrogenase, 2-oxoisovalerate (lipoate) dehydrogenase, 3-methyl-2-oxobutanoate dehydrogenase (lipoamide), 3-methyl-2-oxobutanoate:lipoamide oxidoreductase (decarboxylating and acceptor-2-methylpropanoylating), alpha-keto-alpha-methylvalerate dehydrogenase, alpha-ketoisocaproate dehydrogenase, alpha-ketoisocaproic dehydrogenase, alpha-ketoisocaproic-alpha-keto-alpha-methylvaleric dehydrogenase, alpha-ketoisovalerate dehydrogenase, alpha-oxoisocaproate dehydrogenase, BCKDH, BCOAD, branched chain keto acid dehydrogenase, branched-chain (-2-oxoacid) dehydrogenase (BCD), branched-chain 2-keto acid dehydrogenase, branched-chain 2-oxo acid dehydrogenase, branched-chain alpha-keto acid dehydrogenase, branched-chain alpha-oxo acid dehydrogenase, branched-chain keto acid dehydrogenase, branched-chain ketoacid dehydrogenase, dehydrogenase, 2-oxoisovalerate (lipoate), dehydrogenase, branched chain alpha-keto acid

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1.8.1.4Name: dihydrolipoyl dehydrogenase
Other names: LDP-Glc, LDP-Val, dehydrolipoate dehydrogenase, diaphorase, dihydrolipoamide dehydrogenase, dihydrolipoamide:NAD+ oxidoreductase, dihydrolipoic dehydrogenase, dihydrothioctic dehydrogenase, lipoamide dehydrogenase (NADH), lipoamide oxidoreductase (NADH), lipoamide reductase, lipoamide reductase (NADH), lipoate dehydrogenase, lipoic acid dehydrogenase, lipoyl dehydrogenase, protein-6-N-(dihydrolipoyl)lysine:NAD+ oxidoreductase

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2.3.1.168Name: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase
Other names: dihydrolipoyl transacylase, enzyme-dihydrolipoyllysine:2-methylpropanoyl-CoA S-(2-methylpropanoyl)transferase, 2-methylpropanoyl-CoA:enzyme-6-N-(dihydrolipoyl)lysine S-(2-methylpropanoyl)transferase

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[m] : 2obutName: 2-Oxobutanoate
Formula: C4H5O3
Charge: -1




click to see details on this item + coaName: Coenzyme A
Formula: C21H32N7O16P3S
Charge: -4




click to see details on this item + nadName: Nicotinamide adenine dinucleotide
Formula: C21H26N7O14P2
Charge: -1




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co2Name: CO2
Formula: CO2
Charge: 0




click to see details on this item + nadhName: Nicotinamide adenine dinucleotide - reduced
Formula: C21H27N7O14P2
Charge: -2




click to see details on this item + ppcoaName: Propanoyl-CoA
Formula: C24H36N7O17P3S
Charge: -4




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[(bckd-1A | Y43F4A.4) & bckd-1B] & dld-1 & dbt-1
Propionate degradation
RCC0153Name: Propionyl-CoA:carnitine O-propionyltransferase II
Type: Regular
Location: Cytosol
KEGG ID: NA

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2.3.1.7Name: carnitine O-acetyltransferase
Other names: acetyl-CoA-carnitine O-acetyltransferase, acetylcarnitine transferase, carnitine acetyl coenzyme A transferase, carnitine acetylase, carnitine acetyltransferase, carnitine-acetyl-CoA transferase, CATC

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[c] : crnName: L-Carnitine
Formula: C7H15NO3
Charge: 0




click to see details on this item + ppcoaName: Propanoyl-CoA
Formula: C24H36N7O17P3S
Charge: -4




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coaName: Coenzyme A
Formula: C21H32N7O16P3S
Charge: -4




click to see details on this item + pcrnName: Propionyl-carnitine
Formula: C10H19NO4
Charge: 0




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B0395.3
Propionate degradation
RM00383Name: Acyl-CoA hydrolase
Type: Regular
Location: Mitochondria
KEGG ID: R00383

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3.1.2.18Name: ADP-dependent short-chain-acyl-CoA hydrolase
Other names: short-chain acyl coenzyme A hydrolase, propionyl coenzyme A hydrolase, propionyl-CoA hydrolase, propionyl-CoA thioesterase, short-chain acyl-CoA hydrolase, short-chain acyl-CoA thioesterase

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[m] : ppcoaName: Propanoyl-CoA
Formula: C24H36N7O17P3S
Charge: -4




click to see details on this item + h2oName: H2O
Formula: H2O
Charge: 0




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ppaName: Propionate (n-C3:0)
Formula: C3H5O2
Charge: -1




click to see details on this item + coaName: Coenzyme A
Formula: C21H32N7O16P3S
Charge: -4




click to see details on this item + hName: H+
Formula: H
Charge: 1




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Unknown
Propionate degradation
RC00383Name: Acyl-CoA hydrolase
Type: Regular
Location: Cytosol
KEGG ID: R00383

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3.1.2.18Name: ADP-dependent short-chain-acyl-CoA hydrolase
Other names: short-chain acyl coenzyme A hydrolase, propionyl coenzyme A hydrolase, propionyl-CoA hydrolase, propionyl-CoA thioesterase, short-chain acyl-CoA hydrolase, short-chain acyl-CoA thioesterase

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[c] : ppcoaName: Propanoyl-CoA
Formula: C24H36N7O17P3S
Charge: -4




click to see details on this item + h2oName: H2O
Formula: H2O
Charge: 0




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ppaName: Propionate (n-C3:0)
Formula: C3H5O2
Charge: -1




click to see details on this item + coaName: Coenzyme A
Formula: C21H32N7O16P3S
Charge: -4




click to see details on this item + hName: H+
Formula: H
Charge: 1




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Unknown
Propionate degradation
RM05373Name: methylmalonyl-CoA carboxy-lyase
Type: Regular
Location: Mitochondria
KEGG ID: R05373

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4.1.1.9Name: malonyl-CoA decarboxylase
Other names: malonyl coenzyme A decarboxylase, malonyl-CoA carboxy-lyase

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[m] : hName: H+
Formula: H
Charge: 1




click to see details on this item + mmcoa-SName: (S)-Methylmalonyl-CoA
Formula: C25H35N7O19P3S
Charge: -5




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co2Name: CO2
Formula: CO2
Charge: 0




click to see details on this item + ppcoaName: Propanoyl-CoA
Formula: C24H36N7O17P3S
Charge: -4




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mlcd-1
Propionate degradation
RM04188Name: L-3-amino-isobutanoate:2-oxoglutarate aminotransferase
Type: Regular
Location: Mitochondria
KEGG ID: R04188

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2.6.1.22Name: (S)-3-amino-2-methylpropionate transaminase
Other names: L-3-aminoisobutyrate transaminase, beta-aminobutyric transaminase, L-3-aminoisobutyric aminotransferase, beta-aminoisobutyrate-alpha-ketoglutarate transaminase

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[m] : 2mopName: 2-Methyl-3-oxopropanoate
Formula: C4H5O3
Charge: -1




click to see details on this item + glu-LName: L-Glutamate
Formula: C5H8NO4
Charge: -1




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3aibName: L-3-Amino-isobutanoate
Formula: C4H9NO2
Charge: 0




click to see details on this item + akgName: 2-Oxoglutarate
Formula: C5H4O5
Charge: -2




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gta-1
Propionate degradation
RM00935Name: (S)-Methylmalonate semialdehyde:NAD+ oxidoreductase (CoA-propanoylating)
Type: Regular
Location: Mitochondria
KEGG ID: R00935

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1.2.1.27Name: methylmalonate-semialdehyde dehydrogenase (acylating)
Other names: MSDH, MMSA dehydrogenase

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[m] : 2mopName: 2-Methyl-3-oxopropanoate
Formula: C4H5O3
Charge: -1




click to see details on this item + coaName: Coenzyme A
Formula: C21H32N7O16P3S
Charge: -4




click to see details on this item + nadName: Nicotinamide adenine dinucleotide
Formula: C21H26N7O14P2
Charge: -1




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co2Name: CO2
Formula: CO2
Charge: 0




click to see details on this item + nadhName: Nicotinamide adenine dinucleotide - reduced
Formula: C21H27N7O14P2
Charge: -2




click to see details on this item + ppcoaName: Propanoyl-CoA
Formula: C24H36N7O17P3S
Charge: -4




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alh-8
Propionate degradation
RM01859Name: Propanoyl-CoA:carbon-dioxide ligase (ADP-forming)
Type: Regular
Location: Mitochondria
KEGG ID: R01859

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6.4.1.3Name: propionyl-CoA carboxylase
Other names: propionyl coenzyme A carboxylase

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[m] : atpName: ATP
Formula: C10H12N5O13P3
Charge: -4




click to see details on this item + hco3Name: Bicarbonate
Formula: CHO3
Charge: -1




click to see details on this item + ppcoaName: Propanoyl-CoA
Formula: C24H36N7O17P3S
Charge: -4




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adpName: ADP
Formula: C10H12N5O10P2
Charge: -3




click to see details on this item + hName: H+
Formula: H
Charge: 1




click to see details on this item + mmcoa-SName: (S)-Methylmalonyl-CoA
Formula: C25H35N7O19P3S
Charge: -5




click to see details on this item + piName: Phosphate
Formula: HO4P
Charge: -2




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pcca-1 & pccb-1
Propionate degradation
RM02765Name: Methylmalonyl-CoA epimerase
Type: Regular
Location: Mitochondria
KEGG ID: R02765

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5.1.99.1Name: methylmalonyl-CoA epimerase
Other names: methylmalonyl-CoA racemase, methylmalonyl coenzyme A racemase, DL-methylmalonyl-CoA racemase, 2-methyl-3-oxopropanoyl-CoA 2-epimerase [incorrect]

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[m] : mmcoa-RName: (R)-Methylmalonyl-CoA
Formula: C25H35N7O19P3S
Charge: -5




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mmcoa-SName: (S)-Methylmalonyl-CoA
Formula: C25H35N7O19P3S
Charge: -5




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mce-1
Propionate degradation
RM00833Name: (R)-Methylmalonyl-CoA CoA-carbonylmutase
Type: Regular
Location: Mitochondria
KEGG ID: R00833

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5.4.99.2Name: methylmalonyl-CoA mutase
Other names: methylmalonyl-CoA CoA-carbonyl mutase, methylmalonyl coenzyme A mutase, methylmalonyl coenzyme A carbonylmutase, (S)-methylmalonyl-CoA mutase, (R)-2-methyl-3-oxopropanoyl-CoA CoA-carbonylmutase [incorrect]

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[m] : mmcoa-RName: (R)-Methylmalonyl-CoA
Formula: C25H35N7O19P3S
Charge: -5




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succoaName: Succinyl-CoA
Formula: C25H35N7O19P3S
Charge: -5




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mmcm-1
Propionate degradation
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