WormFlux: mechanistic analysis of C. elegans metabolism

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? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
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Network Biomass WormPaths

PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network WPSWorm Perturb-Seq portal

Metabolite Overview

Abbreviation .....................................................	:	pram
Name .....................................................	:	5-Phospho-beta-D-ribosylamine, etc.5-Phosphoribosylamine, 5-Phospho-D-ribosylamine, 5-Phosphoribosyl-1-amine
Model ID .....................................................	:	C03090
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C03090
Formula .....................................................	:	C5H11NO7P
Charge .....................................................	:	-1
Localization .....................................................	:	Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	pram
Other associations .....................................................	:	See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Glycine and threonine metabolism (c), Purine metabolism (c)

iCEL1314

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Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC01072Name: 5-phosphoribosylamine:diphosphate phospho-alpha-D-ribosyltransferase (glutamate-amidating) Type: Regular Location: Cytosol KEGG ID: R01072 click to see details on this item	2.4.2.14Name: amidophosphoribosyltransferase Other names: phosphoribosyldiphosphate 5-amidotransferase, glutamine phosphoribosyldiphosphate amidotransferase, alpha-5-phosphoribosyl-1-pyrophosphate amidotransferase, 5'-phosphoribosylpyrophosphate amidotransferase, 5-phosphoribosyl-1-pyrophosphate amidotransferase, 5-phosphororibosyl-1-pyrophosphate amidotransferase, glutamine 5-phosphoribosylpyrophosphate amidotransferase, glutamine ribosylpyrophosphate 5-phosphate amidotransferase, phosphoribose pyrophosphate amidotransferase, phosphoribosyl pyrophosphate amidotransferase, phosphoribosylpyrophosphate glutamyl amidotransferase, 5-phosphoribosylamine:diphosphate phospho-alpha-D-ribosyltransferase (glutamate-amidating) click to see details on this item	[c] : gln-LName: L-Glutamine Formula: C5H10N2O3 Charge: 0 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + prppName: 5-Phospho-alpha-D-ribose 1-diphosphate Formula: C5H8O14P3 Charge: -5 click to see details on this item		glu-LName: L-Glutamate Formula: C5H8NO4 Charge: -1 click to see details on this item + ppiName: Diphosphate Formula: HO7P2 Charge: -3 click to see details on this item + pramName: 5-Phospho-beta-D-ribosylamine Formula: C5H11NO7P Charge: -1 click to see details on this item	ppat-1	Purine metabolism
RC04144Name: 5-Phospho-D-ribosylamine:glycine ligase (ADP-forming) Type: Regular Location: Cytosol KEGG ID: R04144 click to see details on this item	6.3.4.13Name: phosphoribosylamine---glycine ligase Other names: phosphoribosylglycinamide synthetase, glycinamide ribonucleotide synthetase, phosphoribosylglycineamide synthetase, glycineamide ribonucleotide synthetase, 2-amino-N-ribosylacetamide 5'-phosphate kinosynthase, 5'-phosphoribosylglycinamide synthetase, GAR click to see details on this item	[c] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + glyName: Glycine Formula: C2H5NO2 Charge: 0 click to see details on this item + pramName: 5-Phospho-beta-D-ribosylamine Formula: C5H11NO7P Charge: -1 click to see details on this item		adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + garName: N1-(5-Phospho-D-ribosyl)glycinamide Formula: C7H14N2O8P Charge: -1 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item + piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item	F38B6.4	Glycine and threonine metabolism

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