WormFlux: mechanistic analysis of C. elegans metabolism

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(?) Enter a search word or phrase (left box), optionally select an appropriate field (middle), and hit the search button or press enter. This search engine is NOT case sensitive.

Use wild characters " ? " and " * " for efficient search:

? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Enzyme Overview

Enzyme (?) Identification in Enzyme Commission (EC) numbering system. .....................................................	:	3.4.-.-
Name .....................................................	:	Bacterial peptide degradation, etc.Protein lysine peptidase
KO (?) The KEGG orthology group (KO) that is associated with this enzyme. .....................................................	:	Not determined
Genes .....................................................	:	K12H4.7
Localization .....................................................	:	Cytosol
Other associations .....................................................	:	See reaction table below.

iCEL1314

Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC04313Name: Protein lysine peptidase Type: Regular Location: Cytosol KEGG ID: R04313 click to see details on this item	3.4.-.-Name: bacterial peptide degradation Other names: protein lysine peptidase click to see details on this item	[c] : peptmelysName: Protein N6,N6,N6-trimethyl-L-lysine Formula: XC9H19N2O Charge: 1 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item		pepXName: Random peptide (special aminoacid carrier) Formula: X Charge: 0 click to see details on this item + tmlysName: N6,N6,N6-Trimethyl-L-lysine Formula: C9H21N2O2 Charge: 1 click to see details on this item	Unknown	Carnitine biosynthesis
DGR0001Name: Bacterial peptide degradation Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	3.4.23.-Name: bacterial peptide degradation click to see details on this item 3.4.-.-Name: bacterial peptide degradation Other names: protein lysine peptidase click to see details on this item	[c] : protein_BACName: Protein component of bacterial diet Formula: X Charge: 0 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item		(0.096044) ala-LName: L-Alanine Formula: C3H7NO2 Charge: 0 click to see details on this item + (0.055304) arg-LName: L-Arginine Formula: C6H15N4O2 Charge: 1 click to see details on this item + (0.04507) asn-LName: L-Asparagine Formula: C4H8N2O3 Charge: 0 click to see details on this item + (0.04507) asp-LName: L-Aspartate Formula: C4H6NO4 Charge: -1 click to see details on this item + (0.017123) cys-LName: L-Cysteine Formula: C3H7NO2S Charge: 0 click to see details on this item + (0.049203) glu-LName: L-Glutamate Formula: C5H8NO4 Charge: -1 click to see details on this item + (0.049203) gln-LName: L-Glutamine Formula: C5H10N2O3 Charge: 0 click to see details on this item + (0.114544) glyName: Glycine Formula: C2H5NO2 Charge: 0 click to see details on this item + (0.017713) his-LName: L-Histidine Formula: C6H9N3O2 Charge: 0 click to see details on this item + (0.05432) ile-LName: L-Isoleucine Formula: C6H13NO2 Charge: 0 click to see details on this item + (0.084235) leu-LName: L-Leucine Formula: C6H13NO2 Charge: 0 click to see details on this item + (0.064161) lys-LName: L-Lysine Formula: C6H15N2O2 Charge: 1 click to see details on this item + (0.028735) met-LName: L-Methionine Formula: C5H11NO2S Charge: 0 click to see details on this item + (0.034639) phe-LName: L-Phenylalanine Formula: C9H11NO2 Charge: 0 click to see details on this item + (0.04133) pro-LName: L-Proline Formula: C5H9NO2 Charge: 0 click to see details on this item + (0.040346) ser-LName: L-Serine Formula: C3H7NO3 Charge: 0 click to see details on this item + (0.047432) thr-LName: L-Threonine Formula: C4H9NO3 Charge: 0 click to see details on this item + (0.010628) trp-LName: L-Tryptophan Formula: C11H12N2O2 Charge: 0 click to see details on this item + (0.025782) tyr-LName: L-Tyrosine Formula: C9H11NO3 Charge: 0 click to see details on this item + (0.079118) val-LName: L-Valine Formula: C5H11NO2 Charge: 0 click to see details on this item	asp-1 \| asp-2 \| asp-3 \| asp-5 \| K12H4.7	Bacterial digestion

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