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(?) Enter a search word or phrase (left box), optionally select an appropriate field (middle), and hit the search button or press enter. This search engine is NOT case sensitive.

Use wild characters " ? " and " * " for efficient search:
  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
WormClustClustering- and enrichment-based association of genes with the metabolic network
Metabolite Overview
Abbreviation ..................................................... : glycogen
Name ..................................................... : glycogen
Model ID ..................................................... : C00182
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : C00182
Formula ..................................................... : C6H10O5
Charge ..................................................... : 0
Localization ..................................................... : Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : glycogen
Other associations ..................................................... : See reaction table below (7 reactions in total)

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space ..................................................... 		: Starch and sucrose metabolism (c)
Comments
  • "bglycogen" in BIGG nomenclature.

    • Reactions
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.     		Pathway
    RC02110Name: 1,4-alpha-D-Glucan:1,4-alpha-D-glucan 6-alpha-D-(1,4-alpha-D-glucano)-transferase
    Type: Regular
    Location: Cytosol
    KEGG ID: R02110

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    2.4.1.18Name: 1,4-alpha-glucan branching enzyme
    Other names: branching enzyme, amylo-(1,4->1,6)-transglycosylase, Q-enzyme, alpha-glucan-branching glycosyltransferase, amylose isomerase, enzymatic branching factor, branching glycosyltransferase, enzyme Q, glucosan transglycosylase, glycogen branching enzyme, plant branching enzyme, alpha-1,4-glucan:alpha-1,4-glucan-6-glycosyltransferase, starch branching enzyme, 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-alpha-D-(1,4-alpha-D-glucano)-transferase

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    [c] : nbglycogenName: non-branching glycogen
    Formula: C6H10O5
    Charge: 0




    click to see details on this item
    glycogenName: glycogen
    Formula: C6H10O5
    Charge: 0




    click to see details on this item
    T04A8.7
    Starch and sucrose metabolism
    RCC0043Name: glycogen phosphorylase
    Type: Regular
    Location: Cytosol
    KEGG ID: R01821

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    2.4.1.1Name: glycogen phosphorylase
    Other names: muscle phosphorylase a and b, amylophosphorylase, polyphosphorylase, amylopectin phosphorylase, glucan phosphorylase, alpha-glucan phosphorylase, 1,4-alpha-glucan phosphorylase, glucosan phosphorylase, granulose phosphorylase, maltodextrin phosphorylase, muscle phosphorylase, myophosphorylase, potato phosphorylase, starch phosphorylase, 1,4-alpha-D-glucan:phosphate alpha-D-glucosyltransferase, phosphorylase (ambiguous)

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    [c] : glycogenName: glycogen
    Formula: C6H10O5
    Charge: 0




    click to see details on this item     + (0.5) piName: Phosphate
    Formula: HO4P
    Charge: -2




    click to see details on this item
    (0.5) g1pName: D-Glucose 1-phosphate
    Formula: C6H11O9P
    Charge: -2




    click to see details on this item     + (0.5) dxtrn1Name: Limited dextrin 1
    Formula: C6H10O5
    Charge: 0




    click to see details on this item
    T22F3.3
    Starch and sucrose metabolism
    BIO0100Name: Assembly of biomass (without DNA)
    Type: Biomass
    Location: Cytosol, Mitochondria
    KEGG ID: NA

    click to see details on this item
    Not applicable
    (0.202508) collgName: Collagen
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (0.204599) glycogenName: glycogen
    Formula: C6H10O5
    Charge: 0




    click to see details on this item    [c] + (0.058654) GlycansName: Glycan pool
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (0.188823) RNAName: RNA (biomass)
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (0.129849) PhosphoLName: Phospholipids
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (0.029368) treName: Trehalose
    Formula: C12H22O11
    Charge: 0




    click to see details on this item    [c] + (0.0001) biomass_minorName: Minor components of biomass
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (1.152647) prot_mitoName: Mitochondrial protein
    Formula: X
    Charge: 0




    click to see details on this item    [m] + (0.117468) tagName: triacylglycerol
    Formula: C3H5FULLR4CO2FULLR5CO2FULLR3CO2
    Charge: 0




    click to see details on this item    [c] + (4.028712) prot_otherName: Non-mitochondrial protein
    Formula: X
    Charge: 0




    click to see details on this item    [c]
    BiomassName: Body Biomass
    Formula: X
    Charge: 0




    click to see details on this item    [c]
    Not applicable
    Biomass assembly
    BIO0102Name: Assembly of biomass (without collagen)
    Type: Biomass
    Location: Cytosol, Mitochondria
    KEGG ID: NA

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    Not applicable
    (0.016249) DNAName: DNA (biomass)
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (0.203528) glycogenName: glycogen
    Formula: C6H10O5
    Charge: 0




    click to see details on this item    [c] + (0.058347) GlycansName: Glycan pool
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (0.187835) RNAName: RNA (biomass)
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (0.129169) PhosphoLName: Phospholipids
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (0.029215) treName: Trehalose
    Formula: C12H22O11
    Charge: 0




    click to see details on this item    [c] + (0.0001) biomass_minorName: Minor components of biomass
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (1.146612) prot_mitoName: Mitochondrial protein
    Formula: X
    Charge: 0




    click to see details on this item    [m] + (0.116853) tagName: triacylglycerol
    Formula: C3H5FULLR4CO2FULLR5CO2FULLR3CO2
    Charge: 0




    click to see details on this item    [c] + (4.580136) prot_otherName: Non-mitochondrial protein
    Formula: X
    Charge: 0




    click to see details on this item    [c]
    BiomassName: Body Biomass
    Formula: X
    Charge: 0




    click to see details on this item    [c]
    Not applicable
    Biomass assembly
    BIO0104Name: Assembly of biomass (without DNA or collagen)
    Type: Biomass
    Location: Cytosol, Mitochondria
    KEGG ID: NA

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    Not applicable
    (0.204599) glycogenName: glycogen
    Formula: C6H10O5
    Charge: 0




    click to see details on this item    [c] + (0.058654) GlycansName: Glycan pool
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (0.188823) RNAName: RNA (biomass)
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (0.129849) PhosphoLName: Phospholipids
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (0.029368) treName: Trehalose
    Formula: C12H22O11
    Charge: 0




    click to see details on this item    [c] + (0.0001) biomass_minorName: Minor components of biomass
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (1.152647) prot_mitoName: Mitochondrial protein
    Formula: X
    Charge: 0




    click to see details on this item    [m] + (0.117468) tagName: triacylglycerol
    Formula: C3H5FULLR4CO2FULLR5CO2FULLR3CO2
    Charge: 0




    click to see details on this item    [c] + (4.604242) prot_otherName: Non-mitochondrial protein
    Formula: X
    Charge: 0




    click to see details on this item    [c]
    BiomassName: Body Biomass
    Formula: X
    Charge: 0




    click to see details on this item    [c]
    Not applicable
    Biomass assembly
    BIO0107Name: Assembly of biomass (all components included)
    Type: Biomass
    Location: Cytosol, Mitochondria
    KEGG ID: NA

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    Not applicable
    (0.201448) collgName: Collagen
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (0.016249) DNAName: DNA (biomass)
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (0.203528) glycogenName: glycogen
    Formula: C6H10O5
    Charge: 0




    click to see details on this item    [c] + (0.058347) GlycansName: Glycan pool
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (0.187835) RNAName: RNA (biomass)
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (0.129169) PhosphoLName: Phospholipids
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (0.029215) treName: Trehalose
    Formula: C12H22O11
    Charge: 0




    click to see details on this item    [c] + (0.0001) biomass_minorName: Minor components of biomass
    Formula: X
    Charge: 0




    click to see details on this item    [c] + (1.146612) prot_mitoName: Mitochondrial protein
    Formula: X
    Charge: 0




    click to see details on this item    [m] + (0.116853) tagName: triacylglycerol
    Formula: C3H5FULLR4CO2FULLR5CO2FULLR3CO2
    Charge: 0




    click to see details on this item    [c] + (4.007619) prot_otherName: Non-mitochondrial protein
    Formula: X
    Charge: 0




    click to see details on this item    [c]
    BiomassName: Body Biomass
    Formula: X
    Charge: 0




    click to see details on this item    [c]
    Not applicable
    Biomass assembly
    SNK0012Name: glycogen sink
    Type: Sink
    Location: Cytosol
    KEGG ID: NA

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    Not applicable
    glycogenName: glycogen
    Formula: C6H10O5
    Charge: 0




    click to see details on this item    [c]
    Not applicable
    Sink reactions
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