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Use wild characters " ? " and " * " for efficient search:
  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
WormClustClustering- and enrichment-based association of genes with the metabolic network
Metabolite Overview
Abbreviation ..................................................... : ficytC
Name ..................................................... : Ferricytochrome c, etc.Cytochrome c3+
Model ID ..................................................... : C00125
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : C00125
Formula ..................................................... : C42H42FeN8O8S2R4
Charge ..................................................... : +1
Localization ..................................................... : Mitochondria
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : ficytC
Other associations ..................................................... : See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space ..................................................... 		:   Go to map
Comments
  • Charge changed from +3 to +1. BIGG charging convention seems to not take into account the carboxyl groups of porphyrin structure. However, these have to be taken into account during cytochrome synthesis. The adjusted charge convention is consistent with mass balance.

    • Reactions
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.     		Pathway
    RM02161Name: Ubiquinol:ferricytochrome-c oxidoreductase
    Type: Regular
    Location: Cytosol, Mitochondria
    KEGG ID: R02161

    click to see details on this item
    1.10.2.2Name: quinol---cytochrome-c reductase
    Other names: ubiquinol---cytochrome-c reductase, coenzyme Q-cytochrome c reductase, dihydrocoenzyme Q-cytochrome c reductase, reduced ubiquinone-cytochrome c reductase, complex III (mitochondrial electron transport), ubiquinone-cytochrome c reductase, ubiquinol-cytochrome c oxidoreductase, reduced coenzyme Q-cytochrome c reductase, ubiquinone-cytochrome c oxidoreductase, reduced ubiquinone-cytochrome c oxidoreductase, mitochondrial electron transport complex III, ubiquinol-cytochrome c-2 oxidoreductase, ubiquinone-cytochrome b-c1 oxidoreductase, ubiquinol-cytochrome c2 reductase, ubiquinol-cytochrome c1 oxidoreductase, CoQH2-cytochrome c oxidoreductase, ubihydroquinol:cytochrome c oxidoreductase, coenzyme QH2-cytochrome c reductase, QH2:cytochrome c oxidoreductase, ubiquinol:ferricytochrome-c oxidoreductase

    click to see details on this item
    (2.0) ficytCName: Ferricytochrome c
    Formula: C42H42FeN8O8S2R4
    Charge: 1




    click to see details on this item    [m] + (2.0) hName: H+
    Formula: H
    Charge: 1




    click to see details on this item    [m] + qh2Name: Ubiquinol
    Formula: C14H20O4
    Charge: 0




    click to see details on this item    [m]
    (2.0) focytCName: Ferrocytochrome C
    Formula: C42H42FeN8O8S2R4
    Charge: 0




    click to see details on this item    [m] + (4.0) hName: H+
    Formula: H
    Charge: 1




    click to see details on this item    [c] + qName: Ubiquinone
    Formula: C14H18O4
    Charge: 0




    click to see details on this item    [m]
    isp-1 & ctb-1 & cyc-1 & (ucr-2.3 | ucr-2.1 | ucr-2.2) & T27E9.2 & T02H6.11 & (F45H10.2 | R07E4.3) & ucr-11 & (cyc-2.1 | cyc-2.2)
    Electron transport chain
    RM00081Name: Ferrocytochrome-c:oxygen oxidoreductase
    Type: Regular
    Location: Cytosol, Mitochondria
    KEGG ID: R00081

    click to see details on this item
    1.9.3.1Name: cytochrome-c oxidase
    Other names: cytochrome oxidase, cytochrome a3, cytochrome aa3, Warburg's respiratory enzyme, indophenol oxidase, indophenolase, complex IV (mitochondrial electron transport), ferrocytochrome c oxidase, NADH cytochrome c oxidase

    click to see details on this item
    (4.0) focytCName: Ferrocytochrome C
    Formula: C42H42FeN8O8S2R4
    Charge: 0




    click to see details on this item    [m] + (8.0) hName: H+
    Formula: H
    Charge: 1




    click to see details on this item    [m] + o2Name: O2
    Formula: O2
    Charge: 0




    click to see details on this item    [m]
    (4.0) ficytCName: Ferricytochrome c
    Formula: C42H42FeN8O8S2R4
    Charge: 1




    click to see details on this item    [m] + (4.0) hName: H+
    Formula: H
    Charge: 1




    click to see details on this item    [c] + (2.0) h2oName: H2O
    Formula: H2O
    Charge: 0




    click to see details on this item    [m]
    (ctc-1 & ctc-2 & ctc-3) & cco-1 & cco-2 & tag-174 & Y71H2AM.5 & F29C4.2 & F26E4.6 & W09C5.8 & (cyc-2.1 | cyc-2.2)
    Electron transport chain
    RM00197Name: (R)-Lactate:ferricytochrome-c 2-oxidoreductase
    Type: Regular
    Location: Mitochondria
    KEGG ID: R00197

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    1.1.2.4Name: D-lactate dehydrogenase (cytochrome)
    Other names: lactic acid dehydrogenase, D-lactate (cytochrome) dehydrogenase, cytochrome-dependent D-(-)-lactate dehydrogenase, D-lactate-cytochrome c reductase, D-(-)-lactic cytochrome c reductase

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    [m] : lac-DName: D-Lactate
    Formula: C3H5O3
    Charge: -1




    click to see details on this item     + (2) ficytCName: Ferricytochrome c
    Formula: C42H42FeN8O8S2R4
    Charge: 1




    click to see details on this item
    pyrName: Pyruvate
    Formula: C3H3O3
    Charge: -1




    click to see details on this item     + (2) focytCName: Ferrocytochrome C
    Formula: C42H42FeN8O8S2R4
    Charge: 0




    click to see details on this item     + (2) hName: H+
    Formula: H
    Charge: 1




    click to see details on this item
    F32D8.12 & (cyc-2.1 | cyc-2.2)
    Methylglyoxal detoxification
    RMC0054Name: Sulfite:ferricytochrome-c oxidoreductase
    Type: Regular
    Location: Cytosol, Mitochondria
    KEGG ID: NA

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    1.8.3.1Name: sulfite oxidase

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    (2.0) ficytCName: Ferricytochrome c
    Formula: C42H42FeN8O8S2R4
    Charge: 1




    click to see details on this item    [m] + h2oName: H2O
    Formula: H2O
    Charge: 0




    click to see details on this item    [c] + so3Name: Sulfite
    Formula: O3S
    Charge: -2




    click to see details on this item    [c]
    (2.0) focytCName: Ferrocytochrome C
    Formula: C42H42FeN8O8S2R4
    Charge: 0




    click to see details on this item    [m] + (2.0) hName: H+
    Formula: H
    Charge: 1




    click to see details on this item    [c] + so4Name: Sulfate
    Formula: O4S
    Charge: -2




    click to see details on this item    [c]
    suox-1 & (cyc-2.1 | cyc-2.2)
    Sulfur metabolism
    RM10151Name: Thiosulfate oxidation (cytochrome c reducing)
    Type: Regular
    Location: Mitochondria
    KEGG ID: R10151

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    Not applicable
    [m] : tsulName: Thiosulfate
    Formula: O3S2
    Charge: -2




    click to see details on this item     + (5.0) h2oName: H2O
    Formula: H2O
    Charge: 0




    click to see details on this item     + (8.0) ficytCName: Ferricytochrome c
    Formula: C42H42FeN8O8S2R4
    Charge: 1




    click to see details on this item
    (2.0) so4Name: Sulfate
    Formula: O4S
    Charge: -2




    click to see details on this item     + (8.0) focytCName: Ferrocytochrome C
    Formula: C42H42FeN8O8S2R4
    Charge: 0




    click to see details on this item     + (10.0) hName: H+
    Formula: H
    Charge: 1




    click to see details on this item
    cyc-2.1 | cyc-2.2
    Sulfur metabolism
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