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  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
WormClustClustering- and enrichment-based association of genes with the metabolic network
Reaction Overview
Model ID ..................................................... : RCC0211
Name ..................................................... : very long chain ascaroside (w-ascr-C27) synthesis
Type (?)

One of the following categories:

Regular: Regular enzymatic reactions that do not fit in any special categories below
Biomass: Reactions that represent the assembly of the worm biomass
Degradation: Reactions that represent the degradation of the bacterial diet
Demand: Reactions that consume products in the compartment that they are produced
Sink: Reactions that can not only consume but also provide a metabolite in a particular compartment (e.g., storage reactions)
Transport: Reactions that transport material between different compartments
Exchange: Reactions that exchange metabolites with the environment
..................................................... 		: Regular
KEGG ID (?) Reactions in KEGG database that match this reaction.

Multiple IDs typically indicate that the model reaction is a merged reaction. ..................................................... 		: Not available
Is in PRIME model (?) Indicates whether the reaction is part of the PRIME model, which is the basis (minimum model) for proper biomass/energy generation and compartmentalization. ..................................................... : No
Reversibility ..................................................... : Irreversible
Localization ..................................................... : Cytosol
Other annotation ..................................................... : See tabular representation below.
Comments
  • GAP filler reaction to make (w) C27:0 ascarosyl fatty acid from C28:0 fatty acid. The actual pathway is yet unknown. To obtain a mass-balanced reaction, reactions in alpha-oxidation pathway (MetaCyc, fatty acid alpha-oxidation 2) was lumped together.
  • See also note #37.

    • ► | Localization scores (click to view)▼ | Localization scores (click to hide)
    Not available
    ► | Reversibility scores (click to view)▼ | Reversibility scores (click to hide)
    Not available
    Reaction
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.     		Pathway
    RCC0211Name: very long chain ascaroside (w-ascr-C27) synthesis
    Type: Regular
    Location: Cytosol
    KEGG ID: NA

    click to see details on this item
    Not applicable
    [c] : fa28p0coaName: octacosanoyl-CoA
    Formula: C49H86N7O17P3S
    Charge: -4




    click to see details on this item     + akgName: 2-Oxoglutarate
    Formula: C5H4O5
    Charge: -2




    click to see details on this item     + (2) o2Name: O2
    Formula: O2
    Charge: 0




    click to see details on this item     + nadName: Nicotinamide adenine dinucleotide
    Formula: C21H26N7O14P2
    Charge: -1




    click to see details on this item     + nadphName: Nicotinamide adenine dinucleotide phosphate - reduced
    Formula: C21H26N7O17P3
    Charge: -4




    click to see details on this item     + h2oName: H2O
    Formula: H2O
    Charge: 0




    click to see details on this item     + atpName: ATP
    Formula: C10H12N5O13P3
    Charge: -4




    click to see details on this item     + cdpasclName: CDP-ascarylose
    Formula: C15H23N3O14P2
    Charge: -2




    click to see details on this item
    27ascfa27p0coaName: 27-ascaryl-heptacosanoic acyl coa
    Formula: C54H94N7O21P3S
    Charge: -4




    click to see details on this item     + succName: Succinate
    Formula: C4H4O4
    Charge: -2




    click to see details on this item     + co2Name: CO2
    Formula: CO2
    Charge: 0




    click to see details on this item     + nadhName: Nicotinamide adenine dinucleotide - reduced
    Formula: C21H27N7O14P2
    Charge: -2




    click to see details on this item     + (3) hName: H+
    Formula: H
    Charge: 1




    click to see details on this item     + ampName: AMP
    Formula: C10H12N5O7P
    Charge: -2




    click to see details on this item     + ppiName: Diphosphate
    Formula: HO7P2
    Charge: -3




    click to see details on this item     + nadpName: Nicotinamide adenine dinucleotide phosphate
    Formula: C21H25N7O17P3
    Charge: -3




    click to see details on this item     + cdpName: CDP
    Formula: C9H12N3O11P2
    Charge: -3




    click to see details on this item     + forName: Formate
    Formula: CH1O2
    Charge: -1




    click to see details on this item
    Unknown
    Ascaroside biosynthesis
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