WormFlux: mechanistic analysis of C. elegans metabolism

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Use wild characters " ? " and " * " for efficient search:

? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Metabolite Overview

Abbreviation .....................................................	:	rq9h2
Name .....................................................	:	Rhodoquinonol-9
Model ID .....................................................	:	CC0158
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	Not available
Formula .....................................................	:	C53H83NO3
Charge .....................................................	:	0
Localization .....................................................	:	Mitochondria
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	Not available
Other associations .....................................................	:	See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Electron transport chain (m), TCA cycle (m)

iCEL1314

Comments

Charge and formula based on rq9 and qh2.

Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RMC0183Name: fumarate reductase Type: Regular Location: Mitochondria KEGG ID: R02164 click to see details on this item	1.3.5.4Name: fumarate reductase (quinol) Other names: FRD, menaquinol-fumarate oxidoreductase, succinate dehydrogenase (menaquinone), succinate:menaquinone oxidoreductase, fumarate reductase (menaquinone), complex II (ambiguous) click to see details on this item	[m] : rq9h2Name: Rhodoquinonol-9 Formula: C53H83NO3 Charge: 0 click to see details on this item + fumName: Fumarate Formula: C4H2O4 Charge: -2 click to see details on this item		rq9Name: Rhodoquinone-9 Formula: C53H81NO3 Charge: 0 click to see details on this item + succName: Succinate Formula: C4H4O4 Charge: -2 click to see details on this item	F48E8.3	TCA cycle
RMC0184Name: NADH:rhodoquinone oxidoreductase Type: Regular Location: Cytosol, Mitochondria KEGG ID: R00281 click to see details on this item	1.6.5.3Name: NADH:ubiquinone reductase (H+-translocating) Other names: ubiquinone reductase, type 1 dehydrogenase, complex 1 dehydrogenase, coenzyme Q reductase, complex I (electron transport chain), complex I (mitochondrial electron transport), complex I (NADH:Q1 oxidoreductase), dihydronicotinamide adenine dinucleotide-coenzyme Q reductase, DPNH-coenzyme Q reductase, DPNH-ubiquinone reductase, mitochondrial electron transport complex 1, mitochondrial electron transport complex I, NADH coenzyme Q1 reductase, NADH-coenzyme Q oxidoreductase, NADH-coenzyme Q reductase, NADH-CoQ oxidoreductase, NADH-CoQ reductase, NADH-ubiquinone reductase, NADH-ubiquinone oxidoreductase, NADH-ubiquinone-1 reductase, reduced nicotinamide adenine dinucleotide-coenzyme Q reductase, NADH:ubiquinone oxidoreductase complex, NADH-Q6 oxidoreductase, electron transfer complex I, NADH2 dehydrogenase (ubiquinone) click to see details on this item 1.6.99.3Name: NADH dehydrogenase Other names: cytochrome c reductase, type 1 dehydrogenase, beta-NADH dehydrogenase dinucleotide, diaphorase, dihydrocodehydrogenase I dehydrogenase, dihydronicotinamide adenine dinucleotide dehydrogenase, diphosphopyridine diaphorase, DPNH diaphorase, NADH diaphorase, NADH hydrogenase, NADH oxidoreductase, NADH-menadione oxidoreductase, reduced diphosphopyridine nucleotide diaphorase, NADH:cytochrome c oxidoreductase, NADH2 dehydrogenase, NADH:(acceptor) oxidoreductase click to see details on this item	rq9Name: Rhodoquinone-9 Formula: C53H81NO3 Charge: 0 click to see details on this item[m] + nadhName: Nicotinamide adenine dinucleotide - reduced Formula: C21H27N7O14P2 Charge: -2 click to see details on this item[m] + (5.0) hName: H+ Formula: H Charge: 1 click to see details on this item[m]		rq9h2Name: Rhodoquinonol-9 Formula: C53H83NO3 Charge: 0 click to see details on this item[m] + nadName: Nicotinamide adenine dinucleotide Formula: C21H26N7O14P2 Charge: -1 click to see details on this item[m] + (4.0) hName: H+ Formula: H Charge: 1 click to see details on this item[c]	(nduo-1 & nduo-2 & nduo-3 & nduo-4 & nduo-5 & nduo-6 & ndfl-4) & [F53F4.10 & (gas-1 \| nduf-2.2) & nuo-2 & nuo-1 & nuo-5 & nduf-7 & T20H4.5 & lpd-5 & nduf-5 & nduf-6] & [F31D4.9 & Y63D3A.7 & C33A12.1 & nuo-3 & F45H10.3 & Y54F10AM.5 & Y53G8AL.2 & nuo-4 & (F37C12.3 \| Y56A3A.19) & C34B2.8] & (F44G4.2 & C18E9.4 & nuo-6 & C25H3.9 & ZK809.3 & D2030.4 & Y51H1A.3 & C16A3.5 & F59C6.5 & Y71H2AM.4 & F42G8.10)	Electron transport chain

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