WormFlux: mechanistic analysis of C. elegans metabolism

HOME DOWNLOAD CITATION HELP

(?) Enter a search word or phrase (left box), optionally select an appropriate field (middle), and hit the search button or press enter. This search engine is NOT case sensitive.

Use wild characters " ? " and " * " for efficient search:

? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Metabolite Overview

Abbreviation .....................................................	:	gchola
Name .....................................................	:	glycocholate, etc.Glycocholic acid, 3alpha,7alpha,12alpha-Trihydroxy-5beta-cholan-24-oylglycine
Model ID .....................................................	:	C01921
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C01921
Formula .....................................................	:	C26H43NO6
Charge .....................................................	:	0
Localization .....................................................	:	Cytosol, Extracellular
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	gchola
Other associations .....................................................	:	See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Biosynthesis of bile acid-like molecules (c,e)

iCEL1314

Comments

ERROR

Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC03718Name: Choloyl-CoA:glycine N-choloyltransferase Type: Regular Location: Cytosol KEGG ID: R03718 click to see details on this item	2.3.1.65Name: bile acid-CoA:amino acid N-acyltransferase Other names: glycine---taurine N-acyltransferase, amino acid N-choloyltransferase, BAT, glycine N-choloyltransferase, BACAT, cholyl-CoA glycine-taurine N-acyltransferase, cholyl-CoA:taurine N-acyltransferase click to see details on this item	[c] : cholcoaName: Choloyl-CoA Formula: C45H70N7O20P3S Charge: -4 click to see details on this item + glyName: Glycine Formula: C2H5NO2 Charge: 0 click to see details on this item		coaName: Coenzyme A Formula: C21H32N7O16P3S Charge: -4 click to see details on this item + gcholaName: glycocholate Formula: C26H43NO6 Charge: 0 click to see details on this item	C31H5.6 \| W03D8.8 \| T05E7.1 \| K05B2.4	Biosynthesis of bile acid-like molecules
TCE0559Name: glycocholate transport Type: Transport Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	gcholaName: glycocholate Formula: C26H43NO6 Charge: 0 click to see details on this item[e]		gcholaName: glycocholate Formula: C26H43NO6 Charge: 0 click to see details on this item[c]	Not determined	Transport
EX01921Name: glycocholate exchange Type: Exchange Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	gcholaName: glycocholate Formula: C26H43NO6 Charge: 0 click to see details on this item[e]			Not applicable	Exchange with the environment

The information and tools provided in this website are to be used for academic purposes only.