WormFlux: mechanistic analysis of C. elegans metabolism

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Use wild characters " ? " and " * " for efficient search:

? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Metabolite Overview

Abbreviation .....................................................	:	asp-D
Name .....................................................	:	D-Aspartate, etc.D-Aspartic acid
Model ID .....................................................	:	C00402
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C00402
Formula .....................................................	:	C4H6NO4
Charge .....................................................	:	-1
Localization .....................................................	:	Cytosol, Extracellular
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	asp-D
Other associations .....................................................	:	See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Aspartate and asparagine metabolism (c,e)

iCEL1314

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ID

Enzyme

Reactants

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Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC00359Name: D-Aspartate:oxygen oxidoreductase (deaminating) Type: Regular Location: Cytosol KEGG ID: R00359 click to see details on this item	1.4.3.1Name: D-aspartate oxidase Other names: aspartic oxidase, D-aspartic oxidase click to see details on this item	[c] : asp-DName: D-Aspartate Formula: C4H6NO4 Charge: -1 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + o2Name: O2 Formula: O2 Charge: 0 click to see details on this item		h2o2Name: Hydrogen peroxide Formula: H2O2 Charge: 0 click to see details on this item + nh4Name: Ammonium Formula: H4N Charge: 1 click to see details on this item + oaaName: Oxaloacetate Formula: C4H2O5 Charge: -2 click to see details on this item	(ddo-1 \| ddo-2 \| ddo-3)	Aspartate and asparagine metabolism
TCE5098Name: D-aspartate transport Type: Transport Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	asp-DName: D-Aspartate Formula: C4H6NO4 Charge: -1 click to see details on this item[c]		asp-DName: D-Aspartate Formula: C4H6NO4 Charge: -1 click to see details on this item[e]	Not determined	Transport
EX00402Name: D-Aspartate exchange Type: Exchange Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	asp-DName: D-Aspartate Formula: C4H6NO4 Charge: -1 click to see details on this item[e]			Not applicable	Exchange with the environment

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