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  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
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Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
WormClustClustering- and enrichment-based association of genes with the metabolic network
Reaction Overview
Model ID ..................................................... : RC04940
Name ..................................................... : 3'-Phosphoadenylylselenate + NADPH <=> Adenosine 3',5'-bisphosphate + Selenite + NADP+ + H+
Type (?)

One of the following categories:

Regular: Regular enzymatic reactions that do not fit in any special categories below
Biomass: Reactions that represent the assembly of the worm biomass
Degradation: Reactions that represent the degradation of the bacterial diet
Demand: Reactions that consume products in the compartment that they are produced
Sink: Reactions that can not only consume but also provide a metabolite in a particular compartment (e.g., storage reactions)
Transport: Reactions that transport material between different compartments
Exchange: Reactions that exchange metabolites with the environment
..................................................... 		: Regular
KEGG ID (?) Reactions in KEGG database that match this reaction.

Multiple IDs typically indicate that the model reaction is a merged reaction. ..................................................... 		: R04940
Is in PRIME model (?) Indicates whether the reaction is part of the PRIME model, which is the basis (minimum model) for proper biomass/energy generation and compartmentalization. ..................................................... : No
Reversibility ..................................................... : Reversible
Localization ..................................................... : Cytosol
Other annotation ..................................................... : See tabular representation below.
Comments
  • Introduced by semi-automated reconstruction.
  • Gap filling: reaction not associated with an enzyme.

    • ► | Localization scores (click to view)▼ | Localization scores (click to hide)
    Not available
    ► | Reversibility scores (click to view)▼ | Reversibility scores (click to hide)

    Score tables (?) Reaction directionality scores for the KEGG reaction(s) that are associated with this model reaction. Different sources are used and evidence is culminated for each direction with respect to the KEGG reaction (click reaction IDs to reach relevant KEGG pages).

    R04940
    Source Forward Backward Reversible
    MetaCyc (?) Score of 1 represents the direction of the reaction as indicated in MetaCyc. Not available Not available Not available
    SEED (?) Score of 1 represents the direction of the reaction as indicated in the SEED database. 0 0 1
    BiGG (?) Score represents 0.5 times the number of models with the indicated direction for this reaction in the BiGG database. Not available Not available Not available
    BRENDA (?) Score represents the proportion of reactions with the indicated direction reported in the BRENDA database for the enzymes associated with this reaction. Only reactions with a reported direction were used in the calculation. Not available Not available Not available
    Total (?) If no direction has >0.5 points, reaction is considered reversible. If the score of one direction with the highest score is more than 25% larger than the next highest score, the direction with the highest score is taken. Else, reaction is considered reversible. Exceptions (i.e., cases when these rules are overridden by other criteria) are idicated in general comments to the reaction. 0.00 0.00 1.00
    Reaction
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.     		Pathway
    RC04940Name: 3'-Phosphoadenylylselenate + NADPH <=> Adenosine 3',5'-bisphosphate + Selenite + NADP+ + H+
    Type: Regular
    Location: Cytosol
    KEGG ID: R04940

    click to see details on this item
    Unknown
    [c] : 3padselName: 3'-Phosphoadenylylselenate
    Formula: C10H11N5O13P2Se
    Charge: -4




    click to see details on this item     + nadphName: Nicotinamide adenine dinucleotide phosphate - reduced
    Formula: C21H26N7O17P3
    Charge: -4




    click to see details on this item
    papName: "Adenosine 3',5'-bisphosphate"
    Formula: C10H11N5O10P2
    Charge: -4




    click to see details on this item     + selntName: Selenite
    Formula: O3Se
    Charge: -2




    click to see details on this item     + nadpName: Nicotinamide adenine dinucleotide phosphate
    Formula: C21H25N7O17P3
    Charge: -3




    click to see details on this item     + hName: H+
    Formula: H
    Charge: 1




    click to see details on this item
    Unknown
    Selenocompound metabolism
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