WormFlux: mechanistic analysis of C. elegans metabolism

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(?) Enter a search word or phrase (left box), optionally select an appropriate field (middle), and hit the search button or press enter. This search engine is NOT case sensitive.

Use wild characters " ? " and " * " for efficient search:

? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Enzyme Overview

Enzyme (?) Identification in Enzyme Commission (EC) numbering system. .....................................................	:	1.4.3.5
Name .....................................................	:	Pyridoxal 5'-phosphate synthase, etc.Pyridoxamine 5'-phosphate oxidase, Pyridoxamine phosphate oxidase, Pyridoxine (pyridoxamine)phosphate oxidase, Pyridoxine (pyridoxamine) 5'-phosphate oxidase, Pyridoxaminephosphate oxidase (EC 1.4.3.5: deaminating), PMP oxidase, Pyridoxol-5'-phosphate:oxygen oxidoreductase (deaminating) (incorrect), Pyridoxamine-phosphate oxidase, PdxH
KO (?) The KEGG orthology group (KO) that is associated with this enzyme. .....................................................	:	K00275pdxH PNPO; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
Genes .....................................................	:	F57B9.1
Localization .....................................................	:	Cytosol
Other associations .....................................................	:	See reaction table below.

External links

Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC00277Name: Pyridoxamine-5-phosphate:oxygen oxidoreductase (deaminating) Type: Regular Location: Cytosol KEGG ID: R00277 click to see details on this item	1.4.3.5Name: pyridoxal 5'-phosphate synthase Other names: pyridoxamine 5'-phosphate oxidase, pyridoxamine phosphate oxidase, pyridoxine (pyridoxamine)phosphate oxidase, pyridoxine (pyridoxamine) 5'-phosphate oxidase, pyridoxaminephosphate oxidase (EC 1.4.3.5: deaminating), PMP oxidase, pyridoxol-5'-phosphate:oxygen oxidoreductase (deaminating) (incorrect), pyridoxamine-phosphate oxidase, PdxH click to see details on this item	[c] : h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + o2Name: O2 Formula: O2 Charge: 0 click to see details on this item + pyam5pName: Pyridoxamine 5'-phosphate Formula: C8H12N2O5P Charge: -1 click to see details on this item		h2o2Name: Hydrogen peroxide Formula: H2O2 Charge: 0 click to see details on this item + nh4Name: Ammonium Formula: H4N Charge: 1 click to see details on this item + pydx5pName: Pyridoxal 5'-phosphate Formula: C8H8NO6P Charge: -2 click to see details on this item	F57B9.1	Vitamin B6 metabolism
RC00278Name: Pyridoxine 5-phosphate:oxygen oxidoreductase Type: Regular Location: Cytosol KEGG ID: R00278 click to see details on this item	1.4.3.5Name: pyridoxal 5'-phosphate synthase Other names: pyridoxamine 5'-phosphate oxidase, pyridoxamine phosphate oxidase, pyridoxine (pyridoxamine)phosphate oxidase, pyridoxine (pyridoxamine) 5'-phosphate oxidase, pyridoxaminephosphate oxidase (EC 1.4.3.5: deaminating), PMP oxidase, pyridoxol-5'-phosphate:oxygen oxidoreductase (deaminating) (incorrect), pyridoxamine-phosphate oxidase, PdxH click to see details on this item	[c] : o2Name: O2 Formula: O2 Charge: 0 click to see details on this item + pdx5pName: Pyridoxine 5'-phosphate Formula: C8H10NO6P Charge: -2 click to see details on this item		h2o2Name: Hydrogen peroxide Formula: H2O2 Charge: 0 click to see details on this item + pydx5pName: Pyridoxal 5'-phosphate Formula: C8H8NO6P Charge: -2 click to see details on this item	F57B9.1	Vitamin B6 metabolism
RC01710Name: Pyridoxamine:oxygen oxidoreductase (deaminating) Type: Regular Location: Cytosol KEGG ID: R01710 click to see details on this item	1.4.3.5Name: pyridoxal 5'-phosphate synthase Other names: pyridoxamine 5'-phosphate oxidase, pyridoxamine phosphate oxidase, pyridoxine (pyridoxamine)phosphate oxidase, pyridoxine (pyridoxamine) 5'-phosphate oxidase, pyridoxaminephosphate oxidase (EC 1.4.3.5: deaminating), PMP oxidase, pyridoxol-5'-phosphate:oxygen oxidoreductase (deaminating) (incorrect), pyridoxamine-phosphate oxidase, PdxH click to see details on this item	[c] : pydamName: Pyridoxamine Formula: C8H13N2O2 Charge: 1 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + o2Name: O2 Formula: O2 Charge: 0 click to see details on this item		pydxName: Pyridoxal Formula: C8H9NO3 Charge: 0 click to see details on this item + nh4Name: Ammonium Formula: H4N Charge: 1 click to see details on this item + h2o2Name: Hydrogen peroxide Formula: H2O2 Charge: 0 click to see details on this item	F57B9.1	Vitamin B6 metabolism
RC01711Name: Pyridoxine:oxygen oxidoreductase (deaminating) Type: Regular Location: Cytosol KEGG ID: R01711 click to see details on this item	1.4.3.5Name: pyridoxal 5'-phosphate synthase Other names: pyridoxamine 5'-phosphate oxidase, pyridoxamine phosphate oxidase, pyridoxine (pyridoxamine)phosphate oxidase, pyridoxine (pyridoxamine) 5'-phosphate oxidase, pyridoxaminephosphate oxidase (EC 1.4.3.5: deaminating), PMP oxidase, pyridoxol-5'-phosphate:oxygen oxidoreductase (deaminating) (incorrect), pyridoxamine-phosphate oxidase, PdxH click to see details on this item	[c] : pydxnName: Pyridoxine Formula: C8H11NO3 Charge: 0 click to see details on this item + o2Name: O2 Formula: O2 Charge: 0 click to see details on this item		pydxName: Pyridoxal Formula: C8H9NO3 Charge: 0 click to see details on this item + h2o2Name: Hydrogen peroxide Formula: H2O2 Charge: 0 click to see details on this item	F57B9.1	Vitamin B6 metabolism

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