HOME DOWNLOAD CITATION HELP
Umass Logo PSB Logo
(?) Enter a search word or phrase (left box), optionally select an appropriate field (middle), and hit the search button or press enter. This search engine is NOT case sensitive.

Use wild characters " ? " and " * " for efficient search:
  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
WormClustClustering- and enrichment-based association of genes with the metabolic network
Metabolite Overview
Abbreviation ..................................................... : tropcollgtyrX
Name ..................................................... : Tropocollagen L-tyrosine (cross-linked)
Model ID ..................................................... : CC0150
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : Not available
Formula ..................................................... : X
Charge ..................................................... : 0
Localization ..................................................... : Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : Not available
Other associations ..................................................... : See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space ..................................................... 		: Collagen biosynthesis (c)
Comments
  • Charge does not matter.

    • Reactions
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.     		Pathway
    RCC0175Name: Tropocollagen crosslinking by dual oxidase
    Type: Regular
    Location: Cytosol
    KEGG ID: NA

    click to see details on this item
    1.6.3.1Name: NAD(P)H oxidase (H2O2-forming)
    Other names: THOX2, ThOX, dual oxidase, p138tox, thyroid NADPH oxidase, thyroid oxidase, thyroid oxidase 2, NADPH oxidase, NAD(P)H:oxygen oxidoreductase, NAD(P)H oxidase

    click to see details on this item
    1.11.1.7Name: peroxidase
    Other names: lactoperoxidase, guaiacol peroxidase, plant peroxidase, Japanese radish peroxidase, horseradish peroxidase (HRP), soybean peroxidase (SBP), extensin peroxidase, heme peroxidase, oxyperoxidase, protoheme peroxidase, pyrocatechol peroxidase, scopoletin peroxidase, Coprinus cinereus peroxidase, Arthromyces ramosus peroxidase

    click to see details on this item
    [c] : (2) tropcollgtyrName: Tropocollagen L-tyrosine (to be cross-linked)
    Formula: XH
    Charge: 0




    click to see details on this item     + nadphName: Nicotinamide adenine dinucleotide phosphate - reduced
    Formula: C21H26N7O17P3
    Charge: -4




    click to see details on this item     + hName: H+
    Formula: H
    Charge: 1




    click to see details on this item     + o2Name: O2
    Formula: O2
    Charge: 0




    click to see details on this item
    (2) tropcollgtyrXName: Tropocollagen L-tyrosine (cross-linked)
    Formula: X
    Charge: 0




    click to see details on this item     + nadpName: Nicotinamide adenine dinucleotide phosphate
    Formula: C21H25N7O17P3
    Charge: -3




    click to see details on this item     + (2) h2oName: H2O
    Formula: H2O
    Charge: 0




    click to see details on this item
    bli-3
    Collagen biosynthesis
    RCC0176Name: Collagen formation
    Type: Regular
    Location: Cytosol
    KEGG ID: NA

    click to see details on this item
    Not applicable
    [c] : (0.99814) tropcollg_restName: Tropocollagen
    Formula: X
    Charge: 0




    click to see details on this item     + (0.00186) tropcollgtyrXName: Tropocollagen L-tyrosine (cross-linked)
    Formula: X
    Charge: 0




    click to see details on this item
    collgName: Collagen
    Formula: X
    Charge: 0




    click to see details on this item
    Not applicable
    Collagen biosynthesis
    The information and tools provided in this website are to be used for academic purposes only.