WormFlux: mechanistic analysis of C. elegans metabolism

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Use wild characters " ? " and " * " for efficient search:

? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Metabolite Overview

Abbreviation .....................................................	:	5mdr1p
Name .....................................................	:	5-Methylthio-5-deoxy-D-ribose 1-phosphate, etc.S-Methyl-5-thio-D-ribose 1-phosphate, S-Methyl-5-thio-alpha-D-ribose 1-phosphate, S-Methyl-5-thio-5-deoxy-D-ribose 1-phosphate
Model ID .....................................................	:	C04188
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C04188
Formula .....................................................	:	C6H11O7PS
Charge .....................................................	:	-2
Localization .....................................................	:	Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	5mdr1p
Other associations .....................................................	:	See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Methionine salvage (c)

iCEL1314

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Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC01402Name: S-methyl-5-thioadenosine:phosphate S-methyl-5-thio-alpha-D-ribosyl-transferase Type: Regular Location: Cytosol KEGG ID: R01402 click to see details on this item	2.4.2.28Name: S-methyl-5'-thioadenosine phosphorylase Other names: 5'-methylthioadenosine nucleosidase, 5'-deoxy-5'-methylthioadenosine phosphorylase, MTA phosphorylase, MeSAdo phosphorylase, MeSAdo/Ado phosphorylase, methylthioadenosine phosphorylase, methylthioadenosine nucleoside phosphorylase, 5'-methylthioadenosine:phosphate methylthio-D-ribosyl-transferase, S-methyl-5-thioadenosine phosphorylase, S-methyl-5-thioadenosine:phosphate S-methyl-5-thio-alpha-D-ribosyl-transferase click to see details on this item	[c] : 5mtaName: 5-Methylthioadenosine Formula: C11H15N5O3S Charge: 0 click to see details on this item + piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item		5mdr1pName: 5-Methylthio-5-deoxy-D-ribose 1-phosphate Formula: C6H11O7PS Charge: -2 click to see details on this item + adeName: Adenine Formula: C5H5N5 Charge: 0 click to see details on this item	B0228.7	Methionine salvage
RC04420Name: 5-methylthioribose-1-phosphate isomerase Type: Regular Location: Cytosol KEGG ID: R04420 click to see details on this item	5.3.1.23Name: S-methyl-5-thioribose-1-phosphate isomerase Other names: methylthioribose 1-phosphate isomerase, 1-PMTR isomerase, 5-methylthio-5-deoxy-D-ribose-1-phosphate ketol-isomerase, S-methyl-5-thio-5-deoxy-D-ribose-1-phosphate ketol-isomerase, S-methyl-5-thio-5-deoxy-D-ribose-1-phosphate aldose-ketose-isomerase, 1-phospho-5'-S-methylthioribose isomerase, S-methyl-5-thio-D-ribose-1-phosphate aldose-ketose-isomerase click to see details on this item	[c] : 5mdr1pName: 5-Methylthio-5-deoxy-D-ribose 1-phosphate Formula: C6H11O7PS Charge: -2 click to see details on this item		5mdru1pName: 5-Methylthio-5-deoxy-D-ribulose 1-phosphate Formula: C6H11O7PS Charge: -2 click to see details on this item	C01G10.9	Methionine salvage

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