Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Metabolite Overview

Abbreviation .....................................................	:	gdpddman
Name .....................................................	:	GDP-4-dehydro-6-deoxy-D-mannose, etc.GDP-4-dehydro-6-deoxy-D-talose, GDP-4-oxo-6-deoxy-D-mannose, GDP-4-dehydro-D-rhamnose, GDP-4-keto-6-deoxy-D-mannose, GDP-4-dehydro-alpha-D-rhamnose, GDP-4-dehydro-6-deoxy-alpha-D-mannose
Model ID .....................................................	:	C01222
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C01222
Formula .....................................................	:	C16H21N5O15P2
Charge .....................................................	:	-2
Localization .....................................................	:	Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	gdpddman
Other associations .....................................................	:	See reaction table below.
In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Fructose and mannose metabolism (c)

iCEL1314

Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&). I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme). & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme). If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC00888Name: GDP-mannose 4,6-hydro-lyase (GDP-4-dehydro-6-deoxy-D-mannose-forming) Type: Regular Location: Cytosol KEGG ID: R00888 click to see details on this item	4.2.1.47Name: GDP-mannose 4,6-dehydratase Other names: guanosine 5'-diphosphate-D-mannose oxidoreductase, guanosine diphosphomannose oxidoreductase, guanosine diphosphomannose 4,6-dehydratase, GDP-D-mannose dehydratase, GDP-D-mannose 4,6-dehydratase, Gmd, GDP-mannose 4,6-hydro-lyase, GDP-mannose 4,6-hydro-lyase (GDP-4-dehydro-6-deoxy-D-mannose-forming) click to see details on this item	[c] : gdpmannName: GDP-D-mannose Formula: C16H23N5O16P2 Charge: -2 click to see details on this item		gdpddmanName: GDP-4-dehydro-6-deoxy-D-mannose Formula: C16H21N5O15P2 Charge: -2 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item	bre-1 | gmd-2	Fructose and mannose metabolism
RC05692Name: GDP-L-fucose:NADP+ 4-oxidoreductase (3,5-epimerizing) Type: Regular Location: Cytosol KEGG ID: R05692 click to see details on this item	1.1.1.271Name: GDP-L-fucose synthase Other names: GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase, GDP-L-fucose:NADP+ 4-oxidoreductase (3,5-epimerizing) click to see details on this item	[c] : gdpddmanName: GDP-4-dehydro-6-deoxy-D-mannose Formula: C16H21N5O15P2 Charge: -2 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item + nadphName: Nicotinamide adenine dinucleotide phosphate - reduced Formula: C21H26N7O17P3 Charge: -4 click to see details on this item		gdpfucName: GDP-L-fucose Formula: C16H23N5O15P2 Charge: -2 click to see details on this item + nadpName: Nicotinamide adenine dinucleotide phosphate Formula: C21H25N7O17P3 Charge: -3 click to see details on this item	ger-1	Fructose and mannose metabolism

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