WormFlux: mechanistic analysis of C. elegans metabolism

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Use wild characters " ? " and " * " for efficient search:

? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network WPSWorm Perturb-Seq portal

Metabolite Overview

Abbreviation .....................................................	:	xylu-L
Name .....................................................	:	L-Xylulose, etc.L-threo-Pentulose, L-Lyxulose
Model ID .....................................................	:	C00312
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C00312
Formula .....................................................	:	C5H10O5
Charge .....................................................	:	0
Localization .....................................................	:	Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	xylu-L
Other associations .....................................................	:	See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Pentose and glucuronate interconversions (c)

iCEL1314

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Enzyme

Reactants

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Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC01904Name: Xylitol:NADP+ 4-oxidoreductase (L-xylulose-forming) Type: Regular Location: Cytosol KEGG ID: R01904 click to see details on this item	1.1.1.10Name: L-xylulose reductase Other names: xylitol dehydrogenase (ambiguous) click to see details on this item	[c] : hName: H+ Formula: H Charge: 1 click to see details on this item + nadphName: Nicotinamide adenine dinucleotide phosphate - reduced Formula: C21H26N7O17P3 Charge: -4 click to see details on this item + xylu-LName: L-Xylulose Formula: C5H10O5 Charge: 0 click to see details on this item		nadpName: Nicotinamide adenine dinucleotide phosphate Formula: C21H25N7O17P3 Charge: -3 click to see details on this item + xyltName: Xylitol Formula: C5H12O5 Charge: 0 click to see details on this item	dhs-21	Pentose and glucuronate interconversions
RC01903Name: L-arabinitol 4-dehydrogenase Type: Regular Location: Cytosol KEGG ID: R01903 click to see details on this item	1.1.1.12Name: L-arabinitol 4-dehydrogenase Other names: pentitol-DPN dehydrogenase (ambiguous), L-arabitol dehydrogenase click to see details on this item	[c] : abtName: L-Arabinitol Formula: C5H12O5 Charge: 0 click to see details on this item + nadName: Nicotinamide adenine dinucleotide Formula: C21H26N7O14P2 Charge: -1 click to see details on this item		hName: H+ Formula: H Charge: 1 click to see details on this item + nadhName: Nicotinamide adenine dinucleotide - reduced Formula: C21H27N7O14P2 Charge: -2 click to see details on this item + xylu-LName: L-Xylulose Formula: C5H10O5 Charge: 0 click to see details on this item	Unknown	Pentose and glucuronate interconversions
RC01905Name: dehydro-L-gulonate decarboxylase Type: Regular Location: Cytosol KEGG ID: R01905 click to see details on this item	4.1.1.34Name: dehydro-L-gulonate decarboxylase Other names: keto-L-gulonate decarboxylase, 3-keto-L-gulonate decarboxylase, 3-dehydro-L-gulonate carboxy-lyase click to see details on this item	[c] : 3dhgulnName: 3-Dehydro-L-gulonate Formula: C6H9O7 Charge: -1 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item		co2Name: CO2 Formula: CO2 Charge: 0 click to see details on this item + xylu-LName: L-Xylulose Formula: C5H10O5 Charge: 0 click to see details on this item	Unknown	Pentose and glucuronate interconversions

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