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Use wild characters " ? " and " * " for efficient search:
  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
PEAPathway Enrichment Analysis
WormClustClustering- and enrichment-based association of genes with the metabolic network WPSWorm Perturb-Seq portal
Metabolite Overview
Abbreviation ..................................................... : pcollg_tri
Name ..................................................... : Procollagen (trimerized)
Model ID ..................................................... : CC0147
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : Not available
Formula ..................................................... : X
Charge ..................................................... : 0
Localization ..................................................... : Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : Not available
Other associations ..................................................... : See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space ..................................................... 		: Collagen biosynthesis (c)
Comments
  • Charge does not matter.

    • Reactions
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.     		Pathway
    RCC0173Name: Procollagen trimerization
    Type: Regular
    Location: Cytosol
    KEGG ID: NA

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    Not determined
    [c] : (3) pcollg_diSName: Procollagen (with di-Sulfide bridges for registration)
    Formula: X
    Charge: 0




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    pcollg_triName: Procollagen (trimerized)
    Formula: X
    Charge: 0




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    To be determined
    Collagen biosynthesis
    RCC0174Name: Tropocollagen formation
    Type: Regular
    Location: Cytosol
    KEGG ID: NA

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    To be determined
    [c] : pcollg_triName: Procollagen (trimerized)
    Formula: X
    Charge: 0




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    (0.99814) tropcollg_restName: Tropocollagen
    Formula: X
    Charge: 0




    click to see details on this item     + (0.00186) tropcollgtyrName: Tropocollagen L-tyrosine (to be cross-linked)
    Formula: XH
    Charge: 0




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    dpy-31 & bli-4
    Collagen biosynthesis
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