WormFlux: mechanistic analysis of C. elegans metabolism

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Use wild characters " ? " and " * " for efficient search:

? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Metabolite Overview

Abbreviation .....................................................	:	retinol-9-cis
Name .....................................................	:	9-cis-retinol
Model ID .....................................................	:	C16682
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C16682
Formula .....................................................	:	C20H30O
Charge .....................................................	:	0
Localization .....................................................	:	Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	retinol-9-cis
Other associations .....................................................	:	See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Retinol metabolism (c)

iCEL1314

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Enzyme

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Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RCC0144Name: retinol isomerase (9-cis) Type: Regular Location: Cytosol KEGG ID: NA click to see details on this item	Unknown	[c] : retinolName: Retinol Formula: C20H30O Charge: 0 click to see details on this item		retinol-9-cisName: 9-cis-retinol Formula: C20H30O Charge: 0 click to see details on this item	Unknown	Retinol metabolism
RC08383Name: retinol dehydrogenase (9-cis,NADH) Type: Regular Location: Cytosol KEGG ID: R08383 click to see details on this item	1.1.-.-Name: retinol dehydrogenase (9-cis,NADH) Other names: retinol: NADP+ oxidoreductase click to see details on this item	[c] : retinol-9-cisName: 9-cis-retinol Formula: C20H30O Charge: 0 click to see details on this item + nadpName: Nicotinamide adenine dinucleotide phosphate Formula: C21H25N7O17P3 Charge: -3 click to see details on this item		retinal-cis-9Name: cis-9-retinal Formula: C20H28O Charge: 0 click to see details on this item + nadphName: Nicotinamide adenine dinucleotide phosphate - reduced Formula: C21H26N7O17P3 Charge: -4 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item	(dhrs-4 \| dhs-13) \| C27D8.4	Retinol metabolism

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