WormFlux: mechanistic analysis of C. elegans metabolism

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? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Metabolite Overview

Abbreviation .....................................................	:	retpalm
Name .....................................................	:	Retinyl palminate, etc.Retinyl palmitate, Vitamin A palmitate, all-trans-Retinyl palmitate, Retinol palmitate
Model ID .....................................................	:	C02588
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C02588
Formula .....................................................	:	C36H60O2
Charge .....................................................	:	0
Localization .....................................................	:	Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	retpalm
Other associations .....................................................	:	See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Retinol metabolism (c)

iCEL1314

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Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC08388Name: all-trans-retinyl ester acylhydrolase, 11-cis-retinol forming Type: Regular Location: Cytosol KEGG ID: R08388 click to see details on this item	3.1.1.64Name: retinoid isomerohydrolase Other names: all-trans-retinyl-palmitate hydrolase (ambiguous), retinol isomerase (ambiguous), all-trans-retinol isomerase:hydrolase (ambiguous), all-trans-retinylester 11-cis isomerohydrolase, RPE65 (gene name) click to see details on this item	[c] : retpalmName: Retinyl palminate Formula: C36H60O2 Charge: 0 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item		retinol-cis-11Name: cis-11-retinol Formula: C20H30O Charge: 0 click to see details on this item + hdcaName: Hexadecanoate (n-C16:0) Formula: C16H31O2 Charge: -1 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item	bcmo-2	Retinol metabolism
RC08381Name: Palmitoyl-CoA:retinol O-acyltransferase (cis) Type: Regular Location: Cytosol KEGG ID: R08381 click to see details on this item	2.3.1.76Name: retinol O-fatty-acyltransferase Other names: retinol acyltransferase, retinol fatty-acyltransferase click to see details on this item	[c] : pmtcoaName: Palmitoyl-CoA (n-C16:0CoA) Formula: C37H62N7O17P3S Charge: -4 click to see details on this item + retinol-cis-11Name: cis-11-retinol Formula: C20H30O Charge: 0 click to see details on this item		coaName: Coenzyme A Formula: C21H32N7O16P3S Charge: -4 click to see details on this item + retpalm-cis-11Name: 11-cis-Retinyl palmitate Formula: C36H60O2 Charge: 0 click to see details on this item	mboa-2	Retinol metabolism
RC02367Name: Palmitoyl-CoA:retinol O-acyltransferase Type: Regular Location: Cytosol KEGG ID: R02367 click to see details on this item	2.3.1.76Name: retinol O-fatty-acyltransferase Other names: retinol acyltransferase, retinol fatty-acyltransferase click to see details on this item	[c] : pmtcoaName: Palmitoyl-CoA (n-C16:0CoA) Formula: C37H62N7O17P3S Charge: -4 click to see details on this item + retinolName: Retinol Formula: C20H30O Charge: 0 click to see details on this item		coaName: Coenzyme A Formula: C21H32N7O16P3S Charge: -4 click to see details on this item + retpalmName: Retinyl palminate Formula: C36H60O2 Charge: 0 click to see details on this item	mboa-2	Retinol metabolism
SNK0028Name: all trans retinyl ester demand Type: Sink Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	retpalmName: Retinyl palminate Formula: C36H60O2 Charge: 0 click to see details on this item[c]			Not applicable	Sink reactions
SNK0029Name: cis-retinyl ester demand Type: Sink Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	retpalm-cis-11Name: 11-cis-Retinyl palmitate Formula: C36H60O2 Charge: 0 click to see details on this item[c]			Not applicable	Sink reactions

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