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Use wild characters " ? " and " * " for efficient search:
  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
WormClustClustering- and enrichment-based association of genes with the metabolic network
Metabolite Overview
Abbreviation ..................................................... : pcollg5hlys
Name ..................................................... : Procollagen 5-hydroxy-L-lysine, etc.Procollagen L-erythro-5-hydroxylysine
Model ID ..................................................... : C01211
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : C01211
Formula ..................................................... : XHO
Charge ..................................................... : +1
Localization ..................................................... : Cytosol, Extracellular
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : pcollg5hlys
Other associations ..................................................... : See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space ..................................................... 		: Collagen biosynthesis (c)
Comments
  • Formula is adjusted to CEL model.
  • Charge is according to MetaCyc.

    • Reactions
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.     		Pathway
    RC03376Name: Protein lysine,2-oxoglutarate:oxygen oxidoreductase (5-hydroxylating)
    Type: Regular
    Location: Cytosol
    KEGG ID: R03376

    click to see details on this item
    1.14.11.4Name: procollagen-lysine 5-dioxygenase
    Other names: lysine hydroxylase, lysine,2-oxoglutarate 5-dioxygenase, protocollagen lysine dioxygenase, collagen lysine hydroxylase, lysine-2-oxoglutarate dioxygenase, lysyl hydroxylase, lysylprotocollagen dioxygenase, protocollagen lysyl hydroxylase, peptidyl-lysine, 2-oxoglutarate: oxygen oxidoreductase, peptidyllysine, 2-oxoglutarate:oxygen 5-oxidoreductase, protocollagen lysine hydroxylase, procollagen-L-lysine,2-oxoglutarate:oxygen oxidoreductase (5-hydroxylating)

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    [c] : akgName: 2-Oxoglutarate
    Formula: C5H4O5
    Charge: -2




    click to see details on this item     + o2Name: O2
    Formula: O2
    Charge: 0




    click to see details on this item     + pcollglysName: Procollagen L-lysine (to be modified)
    Formula: XH
    Charge: 1




    click to see details on this item
    co2Name: CO2
    Formula: CO2
    Charge: 0




    click to see details on this item     + pcollg5hlysName: Procollagen 5-hydroxy-L-lysine
    Formula: XHO
    Charge: 1




    click to see details on this item     + succName: Succinate
    Formula: C4H4O4
    Charge: -2




    click to see details on this item
    let-268
    Collagen biosynthesis
    RCC0171Name: Procollagen synthesis (modified protein)
    Type: Regular
    Location: Cytosol
    KEGG ID: NA

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    Not applicable
    [c] : (0.921682) pcollg_restName: Procollagen (unmodified portion)
    Formula: X
    Charge: 0




    click to see details on this item     + (0.006239) pcollg5hlysName: Procollagen 5-hydroxy-L-lysine
    Formula: XHO
    Charge: 1




    click to see details on this item     + (0.072079) pcollg4hproName: Procollagen trans-4-hydroxy-L-proline
    Formula: XOH
    Charge: 0




    click to see details on this item
    pcollg_modName: Procollagen (modified protein)
    Formula: X
    Charge: 0




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    Not applicable
    Collagen biosynthesis
    TCE5377Name: Procollagen 5-hydroxy-L-lysine transport
    Type: Transport
    Location: Cytosol, Extracellular
    KEGG ID: NA

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    Not applicable
    pcollg5hlysName: Procollagen 5-hydroxy-L-lysine
    Formula: XHO
    Charge: 1




    click to see details on this item    [c]
    pcollg5hlysName: Procollagen 5-hydroxy-L-lysine
    Formula: XHO
    Charge: 1




    click to see details on this item    [e]
    Not determined
    Transport
    EX01211Name: Procollagen 5-hydroxy-L-lysine exchange
    Type: Exchange
    Location: Extracellular
    KEGG ID: NA

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    Not applicable
    pcollg5hlysName: Procollagen 5-hydroxy-L-lysine
    Formula: XHO
    Charge: 1




    click to see details on this item    [e]
    Not applicable
    Exchange with the environment
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