WormFlux: mechanistic analysis of C. elegans metabolism

HOME DOWNLOAD CITATION HELP

(?) Enter a search word or phrase (left box), optionally select an appropriate field (middle), and hit the search button or press enter. This search engine is NOT case sensitive.

Use wild characters " ? " and " * " for efficient search:

? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Metabolite Overview

Abbreviation .....................................................	:	glyb
Name .....................................................	:	Glycine betaine, etc.Betaine, Trimethylaminoacetate, N,N,N-Trimethylglycine, Trimethylammonioacetate
Model ID .....................................................	:	C00719
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C00719
Formula .....................................................	:	C5H11NO2
Charge .....................................................	:	0
Localization .....................................................	:	Mitochondria, Cytosol, Extracellular
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	glyb
Other associations .....................................................	:	See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Glycerophospholipid metabolism (c,e,m)

iCEL1314

Comments

ERROR

Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RM02565Name: p-Cumic alcohol:NADP+ oxidoreductase Type: Regular Location: Mitochondria KEGG ID: R02565 click to see details on this item	1.2.1.8Name: betaine-aldehyde dehydrogenase Other names: betaine aldehyde oxidase, BADH, betaine aldehyde dehydrogenase, BetB click to see details on this item	[m] : betaldName: Betaine aldehyde Formula: C5H12NO Charge: 1 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + nadName: Nicotinamide adenine dinucleotide Formula: C21H26N7O14P2 Charge: -1 click to see details on this item		glybName: Glycine betaine Formula: C5H11NO2 Charge: 0 click to see details on this item + (2) hName: H+ Formula: H Charge: 1 click to see details on this item + nadhName: Nicotinamide adenine dinucleotide - reduced Formula: C21H27N7O14P2 Charge: -2 click to see details on this item	alh-9	Glycerophospholipid metabolism
RM02566Name: p-Cumic alcohol:NADP+ oxidoreductase Type: Regular Location: Mitochondria KEGG ID: R02566 click to see details on this item	1.2.1.8Name: betaine-aldehyde dehydrogenase Other names: betaine aldehyde oxidase, BADH, betaine aldehyde dehydrogenase, BetB click to see details on this item	[m] : betaldName: Betaine aldehyde Formula: C5H12NO Charge: 1 click to see details on this item + nadpName: Nicotinamide adenine dinucleotide phosphate Formula: C21H25N7O17P3 Charge: -3 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item		glybName: Glycine betaine Formula: C5H11NO2 Charge: 0 click to see details on this item + nadphName: Nicotinamide adenine dinucleotide phosphate - reduced Formula: C21H26N7O17P3 Charge: -4 click to see details on this item + (2.0) hName: H+ Formula: H Charge: 1 click to see details on this item	alh-9	Glycerophospholipid metabolism
TCE0752Name: Glycine betaine and Sodium transport Type: Transport Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	glybName: Glycine betaine Formula: C5H11NO2 Charge: 0 click to see details on this item[e] + (2.0) na1Name: Sodium Formula: Na Charge: 1 click to see details on this item[e]		glybName: Glycine betaine Formula: C5H11NO2 Charge: 0 click to see details on this item[c] + (2.0) na1Name: Sodium Formula: Na Charge: 1 click to see details on this item[c]	Not determined	Transport
TCM0106Name: Glycine betaine transport Type: Transport Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	glybName: Glycine betaine Formula: C5H11NO2 Charge: 0 click to see details on this item[m]		glybName: Glycine betaine Formula: C5H11NO2 Charge: 0 click to see details on this item[c]	Not determined	Transport
EX00719Name: Glycine betaine exchange Type: Exchange Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	glybName: Glycine betaine Formula: C5H11NO2 Charge: 0 click to see details on this item[e]			Not applicable	Exchange with the environment

The information and tools provided in this website are to be used for academic purposes only.