WormFlux: mechanistic analysis of C. elegans metabolism

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Use wild characters " ? " and " * " for efficient search:

? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Metabolite Overview

Abbreviation .....................................................	:	grdp
Name .....................................................	:	Geranyl diphosphate
Model ID .....................................................	:	C00341
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C00341
Formula .....................................................	:	C10H17O7P2
Charge .....................................................	:	-3
Localization .....................................................	:	Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	grdp
Other associations .....................................................	:	See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Mevalonate metabolism (c)

iCEL1314

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Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC01658Name: Dimethylallyl-diphosphate:isopentenyl-diphosphate dimethylallyltranstransferase Type: Regular Location: Cytosol KEGG ID: R01658 click to see details on this item	2.5.1.1Name: dimethylallyltranstransferase Other names: geranyl-diphosphate synthase, prenyltransferase, dimethylallyltransferase, DMAPP:IPP-dimethylallyltransferase, (2E,6E)-farnesyl diphosphate synthetase, diprenyltransferase, geranyl pyrophosphate synthase, geranyl pyrophosphate synthetase, trans-farnesyl pyrophosphate synthetase click to see details on this item	[c] : dmppName: Dimethylallyl diphosphate Formula: C5H9O7P2 Charge: -3 click to see details on this item + ipdpName: Isopentenyl diphosphate Formula: C5H9O7P2 Charge: -3 click to see details on this item		grdpName: Geranyl diphosphate Formula: C10H17O7P2 Charge: -3 click to see details on this item + ppiName: Diphosphate Formula: HO7P2 Charge: -3 click to see details on this item	fdps-1	Mevalonate metabolism
RC02003Name: Geranyl-diphosphate:isopentenyl-diphosphate geranyltrans-transferase Type: Regular Location: Cytosol KEGG ID: R02003 click to see details on this item	2.5.1.10Name: (2E,6E)-farnesyl diphosphate synthase Other names: farnesyl-diphosphate synthase, geranyl transferase I, prenyltransferase, farnesyl pyrophosphate synthetase, farnesylpyrophosphate synthetase, geranyltranstransferase click to see details on this item	[c] : grdpName: Geranyl diphosphate Formula: C10H17O7P2 Charge: -3 click to see details on this item + ipdpName: Isopentenyl diphosphate Formula: C5H9O7P2 Charge: -3 click to see details on this item		frdpName: Farnesyl diphosphate Formula: C15H25O7P2 Charge: -3 click to see details on this item + ppiName: Diphosphate Formula: HO7P2 Charge: -3 click to see details on this item	fdps-1	Mevalonate metabolism

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