HOME DOWNLOAD CITATION HELP
Umass Logo PSB Logo
(?) Enter a search word or phrase (left box), optionally select an appropriate field (middle), and hit the search button or press enter. This search engine is NOT case sensitive.

Use wild characters " ? " and " * " for efficient search:
  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
WormClustClustering- and enrichment-based association of genes with the metabolic network
Metabolite Overview
Abbreviation ..................................................... : urea
Name ..................................................... : Urea, etc.Carbamide
Model ID ..................................................... : C00086
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : C00086
Formula ..................................................... : CH4N2O
Charge ..................................................... : 0
Localization ..................................................... : Cytosol, Extracellular
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : urea
Other associations ..................................................... : See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space ..................................................... 		: Arginine metabolism (c,e)
Comments
ERROR
Reactions
ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses. 		Pathway
RC00551Name: L-Arginine amidinohydrolase
Type: Regular
Location: Cytosol
KEGG ID: R00551

click to see details on this item
3.5.3.1Name: arginase
Other names: arginine amidinase, canavanase, L-arginase, arginine transamidinase

click to see details on this item
[c] : arg-LName: L-Arginine
Formula: C6H15N4O2
Charge: 1




click to see details on this item + h2oName: H2O
Formula: H2O
Charge: 0




click to see details on this item
ornName: Ornithine
Formula: C5H13N2O2
Charge: 1




click to see details on this item + ureaName: Urea
Formula: CH4N2O
Charge: 0




click to see details on this item
T21F4.1
Arginine metabolism
DMN0058Name: tmao and urea demand for osmotic balancing
Type: Demand
Location: Cytosol
KEGG ID: NA

click to see details on this item
Not applicable
tmaoName: Trimethylamine N-oxide
Formula: C3H9NO
Charge: 0




click to see details on this item[c] + (2.0) ureaName: Urea
Formula: CH4N2O
Charge: 0




click to see details on this item[c]
Not applicable
Demand reactions
TCE0440Name: Urea transport
Type: Transport
Location: Cytosol, Extracellular
KEGG ID: NA

click to see details on this item
Not applicable
ureaName: Urea
Formula: CH4N2O
Charge: 0




click to see details on this item[e]
ureaName: Urea
Formula: CH4N2O
Charge: 0




click to see details on this item[c]
Not determined
Transport
EX00086Name: Urea exchange
Type: Exchange
Location: Extracellular
KEGG ID: NA

click to see details on this item
Not applicable
ureaName: Urea
Formula: CH4N2O
Charge: 0




click to see details on this item[e]
Not applicable
Exchange with the environment
The information and tools provided in this website are to be used for academic purposes only.