Network Biomass

FBA FVA Integrate expression

Metabolite Overview

Abbreviation .....................................................	:	r5p
Name .....................................................	:	alpha-D-Ribose 5-phosphate, etc.D-Ribose 5-phosphate, Ribose 5-phosphate
Model ID .....................................................	:	C00117
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C00117
Formula .....................................................	:	C5H9O8P
Charge .....................................................	:	-2
Localization .....................................................	:	Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	r5p
Other associations .....................................................	:	See reaction table below (8 reactions in total)

iCEL1273

Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&). I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme). & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme). If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC01056Name: D-ribose-5-phosphate aldose-ketose-isomerase Type: Regular Location: Cytosol KEGG ID: R01056 click to see details on this item	5.3.1.6Name: ribose-5-phosphate isomerase Other names: phosphopentosisomerase, phosphoriboisomerase, ribose phosphate isomerase, 5-phosphoribose isomerase, D-ribose 5-phosphate isomerase, D-ribose-5-phosphate ketol-isomerase click to see details on this item	[c] : r5pName: alpha-D-Ribose 5-phosphate Formula: C5H9O8P Charge: -2 click to see details on this item		ru5p-DName: D-Ribulose 5-phosphate Formula: C5H9O8P Charge: -2 click to see details on this item	rpia-1	Pentose phosphate pathway
RC01049Name: ATP:D-ribose-5-phosphate diphosphotransferase Type: Regular Location: Cytosol KEGG ID: R01049 click to see details on this item	2.7.6.1Name: ribose-phosphate diphosphokinase Other names: ribose-phosphate pyrophosphokinase, PRPP synthetase, phosphoribosylpyrophosphate synthetase, PPRibP synthetase, PP-ribose P synthetase, 5-phosphoribosyl-1-pyrophosphate synthetase, 5-phosphoribose pyrophosphorylase, 5-phosphoribosyl-alpha-1-pyrophosphate synthetase, phosphoribosyl-diphosphate synthetase, phosphoribosylpyrophosphate synthase, pyrophosphoribosylphosphate synthetase, ribophosphate pyrophosphokinase, ribose-5-phosphate pyrophosphokinase click to see details on this item	[c] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + r5pName: alpha-D-Ribose 5-phosphate Formula: C5H9O8P Charge: -2 click to see details on this item		ampName: AMP Formula: C10H12N5O7P Charge: -2 click to see details on this item + prppName: 5-Phospho-alpha-D-ribose 1-diphosphate Formula: C5H8O14P3 Charge: -5 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item	R151.2	Pentose phosphate pathway
RC01051Name: ATP:D-ribose 5-phosphotransferase Type: Regular Location: Cytosol KEGG ID: R01051 click to see details on this item	2.7.1.15Name: ribokinase Other names: deoxyribokinase, ribokinase (phosphorylating), D-ribokinase click to see details on this item	[c] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + rib-DName: D-Ribose Formula: C5H10O5 Charge: 0 click to see details on this item		adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + r5pName: alpha-D-Ribose 5-phosphate Formula: C5H9O8P Charge: -2 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item	F07A11.5	Pentose phosphate pathway
RC01641Name: Sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glycolaldehyde transferase Type: Regular Location: Cytosol KEGG ID: R01641 click to see details on this item	2.2.1.1Name: transketolase Other names: glycolaldehydetransferase click to see details on this item	[c] : s7pName: Sedoheptulose 7-phosphate Formula: C7H13O10P Charge: -2 click to see details on this item + g3pName: Glyceraldehyde 3-phosphate Formula: C3H5O6P Charge: -2 click to see details on this item		r5pName: alpha-D-Ribose 5-phosphate Formula: C5H9O8P Charge: -2 click to see details on this item + xu5p-DName: D-Xylulose 5-phosphate Formula: C5H9O8P Charge: -2 click to see details on this item	tkt-1	Pentose phosphate pathway
RC01057Name: D-Ribose 1,5-phosphomutase Type: Regular Location: Cytosol KEGG ID: R01057 click to see details on this item	5.4.2.2Name: phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) Other names: glucose phosphomutase, phosphoglucose mutase click to see details on this item 5.4.2.7Name: phosphopentomutase Other names: phosphodeoxyribomutase, deoxyribose phosphomutase, deoxyribomutase, phosphoribomutase, alpha-D-glucose-1,6-bisphosphate:deoxy-D-ribose-1-phosphate phosphotransferase, D-ribose 1,5-phosphomutase click to see details on this item	[c] : r1pName: alpha-D-Ribose 1-phosphate Formula: C5H9O8P Charge: -2 click to see details on this item		r5pName: alpha-D-Ribose 5-phosphate Formula: C5H9O8P Charge: -2 click to see details on this item	(R05F9.6 | Y43F4B.5) | Y43F4B.5	Pentose phosphate pathway
RC01054Name: ADP-ribose ribophosphohydrolase Type: Regular Location: Cytosol KEGG ID: R01054 click to see details on this item	3.6.1.13Name: ADP-ribose diphosphatase Other names: ADPribose pyrophosphatase, adenosine diphosphoribose pyrophosphatase, ADPR-PPase, ADP-ribose ribophosphohydrolase click to see details on this item	[c] : adpribName: ADPribose Formula: C15H21N5O14P2 Charge: -2 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item		ampName: AMP Formula: C10H12N5O7P Charge: -2 click to see details on this item + (2) hName: H+ Formula: H Charge: 1 click to see details on this item + r5pName: alpha-D-Ribose 5-phosphate Formula: C5H9O8P Charge: -2 click to see details on this item	ndx-2 | ndx-6	Purine metabolism
RC01055Name: uracil hydro-lyase Type: Regular Location: Cytosol KEGG ID: R01055 click to see details on this item	3.2.-.-Name: uracil hydro-lyase click to see details on this item	[c] : r5pName: alpha-D-Ribose 5-phosphate Formula: C5H9O8P Charge: -2 click to see details on this item + uraName: Uracil Formula: C4H4N2O2 Charge: 0 click to see details on this item		h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + psd5pName: Pseudouridine 5'-phosphate Formula: C9H11N2O9P Charge: -2 click to see details on this item	T24C12.3	Pyrimidine metabolism
DGR0016Name: Bacterial lipa (inner LPS and first two monomers of outer section) degradation Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	To be determined	[c] : lipa_BACName: KDO(2)-lipid (A) Formula: C110H196N2O39P2 Charge: -6 click to see details on this item + (4) nadhName: Nicotinamide adenine dinucleotide - reduced Formula: C21H27N7O14P2 Charge: -2 click to see details on this item + (5) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item		ddcaName: Dodecanoate (n-C12:0) Formula: C12H23O2 Charge: -1 click to see details on this item + (5) ttdcaName: tetradecanoate (n-C14:0) Formula: C14H27O2 Charge: -1 click to see details on this item + (4) nadName: Nicotinamide adenine dinucleotide Formula: C21H26N7O14P2 Charge: -1 click to see details on this item + (2) r5pName: alpha-D-Ribose 5-phosphate Formula: C5H9O8P Charge: -2 click to see details on this item + (2) pyrName: Pyruvate Formula: C3H3O3 Charge: -1 click to see details on this item + (2) gamName: D-Glucosamine Formula: C6H14NO5 Charge: 1 click to see details on this item	Not determined	Bacterial digestion

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