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(?) Enter a search word or phrase (left box), optionally select an appropriate field (middle), and hit the search button or press enter. This search engine is NOT case sensitive.

Use wild characters " ? " and " * " for efficient search:
  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass
FBA FVA Integrate expression
Pathway Overview
Name ..................................................... : Biomass assembly
Related pathway (?) The pathway found in other databases to which this pathway is related. ..................................................... : ERROR
Number of reactions ..................................................... : 19
Reactions (?) Click to see these reactions in the related KEGG pathway (only enzymes that are represented in kegg are highlighted).
ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.
Pathway
Not applicable
[m] : (2.0) gtpName: GTP
Formula: C10H12N5O14P3
Charge: -4




click to see details on this item
+ (0.324) atpName: ATP
Formula: C10H12N5O13P3
Charge: -4




click to see details on this item
+ (2.324) h2oName: H2O
Formula: H2O
Charge: 0




click to see details on this item
+ (0.111867) alatrnaName: L-Alanyl-tRNA(Ala)
Formula: C3H7NOR
Charge: 1




click to see details on this item
+ (0.048846) argtrnaName: L-Arginyl-tRNA(Arg)
Formula: C6H15N4OR
Charge: 2




click to see details on this item
+ (0.035405) asntrnaName: L-Asparaginyl-tRNA(Asn)
Formula: C4H8N2O2R
Charge: 1




click to see details on this item
+ (0.064946) asptrnaName: L-Aspartyl-tRNA(Asp)
Formula: C4H6NO3R
Charge: 0




click to see details on this item
+ (0.008665) cystrnaName: L-Cysteinyl-tRNA(Cys)
Formula: C3H7NOSR
Charge: 1




click to see details on this item
+ (0.067386) glutrnaName: L-Glutamyl-tRNA(Glu)
Formula: C5H8NO3R
Charge: 0




click to see details on this item
+ (0.037694) glntrnaName: L-Glutaminyl-tRNA(Gln)
Formula: C5H10N2O2R
Charge: 1




click to see details on this item
+ (0.094618) glytrnaName: Glycyl-tRNA(Gly)
Formula: C2H5NOR
Charge: 1




click to see details on this item
+ (0.01782) histrnaName: L-Histidyl-tRNA(His)
Formula: C6H9N3OR
Charge: 1




click to see details on this item
+ (0.053231) iletrnaName: L-Isoleucyl-tRNA(Ile)
Formula: C6H13NOR
Charge: 1




click to see details on this item
+ (0.082051) leutrnaName: L-Leucyl-tRNA(Leu)
Formula: C6H13NOR
Charge: 1




click to see details on this item
+ (0.071622) lystrnaName: L-Lysine-tRNA (Lys)
Formula: C6H15N2OR
Charge: 2




click to see details on this item
+ (0.020458) mettrnaName: L-Methionyl-tRNA (Met)
Formula: C5H11NOSR
Charge: 1




click to see details on this item
+ (0.035592) phetrnaName: L-Phenylalanyl-tRNA(Phe)
Formula: C9H11NOR
Charge: 1




click to see details on this item
+ (0.043238) protrnaName: L-Prolyl-tRNA(Pro)
Formula: C5H9NOR
Charge: 1




click to see details on this item
+ (0.045815) sertrnaName: L-Seryl-tRNA(Ser)
Formula: C3H7NO2R
Charge: 1




click to see details on this item
+ (0.049868) thrtrnaName: L-Threonyl-tRNA(Thr)
Formula: C4H9NO2R
Charge: 1




click to see details on this item
+ (0.008944) trptrnaName: L-Tryptophanyl-tRNA(Trp)
Formula: C11H12N2OR
Charge: 1




click to see details on this item
+ (0.026832) tyrtrnaName: L-Tyrosyl-tRNA(Tyr)
Formula: C9H11NO2R
Charge: 1




click to see details on this item
+ (0.075105) valtrnaName: L-Valyl-tRNA(Val)
Formula: C5H11NOR
Charge: 1




click to see details on this item
prot_mitoName: Mitochondrial protein
Formula: X
Charge: 0




click to see details on this item
+ (2.0) gdpName: GDP
Formula: C10H12N5O11P2
Charge: -3




click to see details on this item
+ (0.324) adpName: ADP
Formula: C10H12N5O10P2
Charge: -3




click to see details on this item
+ (2.324) hName: H+
Formula: H
Charge: 1




click to see details on this item
+ (2.324) piName: Phosphate
Formula: HO4P
Charge: -2




click to see details on this item
+ (0.111867) trnaalaName: tRNA(Ala)
Formula: RH
Charge: 0




click to see details on this item
+ (0.048846) trnaargName: tRNA(Arg)
Formula: RH
Charge: 0




click to see details on this item
+ (0.035405) trnaasnName: tRNA(Asn)
Formula: RH
Charge: 0




click to see details on this item
+ (0.064946) trnaaspName: tRNA(Asp)
Formula: RH
Charge: 0




click to see details on this item
+ (0.008665) trnacysName: tRNA(Cys)
Formula: RH
Charge: 0




click to see details on this item
+ (0.067386) trnagluName: tRNA (Glu)
Formula: RH
Charge: 0




click to see details on this item
+ (0.037694) trnaglnName: tRNA(Gln)
Formula: RH
Charge: 0




click to see details on this item
+ (0.094618) trnaglyName: tRNA(Gly)
Formula: RH
Charge: 0




click to see details on this item
+ (0.01782) trnahisName: tRNA(His)
Formula: RH
Charge: 0




click to see details on this item
+ (0.053231) trnaileName: tRNA(Ile)
Formula: RH
Charge: 0




click to see details on this item
+ (0.082051) trnaleuName: tRNA(Leu)
Formula: RH
Charge: 0




click to see details on this item
+ (0.071622) trnalysName: tRNA(Lys)
Formula: RH
Charge: 0




click to see details on this item
+ (0.020458) trnametName: tRNA(Met)
Formula: RH
Charge: 0




click to see details on this item
+ (0.035592) trnapheName: tRNA(Phe)
Formula: RH
Charge: 0




click to see details on this item
+ (0.043238) trnaproName: tRNA(Pro)
Formula: RH
Charge: 0




click to see details on this item
+ (0.045815) trnaserName: tRNA(Ser)
Formula: RH
Charge: 0




click to see details on this item
+ (0.049868) trnathrName: tRNA(Thr)
Formula: RH
Charge: 0




click to see details on this item
+ (0.008944) trnatrpName: tRNA(Trp)
Formula: RH
Charge: 0




click to see details on this item
+ (0.026832) trnatyrName: tRNA(Tyr)
Formula: RH
Charge: 0




click to see details on this item
+ (0.075105) trnavalName: tRNA(Val)
Formula: RH
Charge: 0




click to see details on this item
Not applicable
Not applicable
[c] : (2.0) gtpName: GTP
Formula: C10H12N5O14P3
Charge: -4




click to see details on this item
+ (0.324) atpName: ATP
Formula: C10H12N5O13P3
Charge: -4




click to see details on this item
+ (2.324) h2oName: H2O
Formula: H2O
Charge: 0




click to see details on this item
+ (0.12769) alatrnaName: L-Alanyl-tRNA(Ala)
Formula: C3H7NOR
Charge: 1




click to see details on this item
+ (0.042387) argtrnaName: L-Arginyl-tRNA(Arg)
Formula: C6H15N4OR
Charge: 2




click to see details on this item
+ (0.025739) asntrnaName: L-Asparaginyl-tRNA(Asn)
Formula: C4H8N2O2R
Charge: 1




click to see details on this item
+ (0.084822) asptrnaName: L-Aspartyl-tRNA(Asp)
Formula: C4H6NO3R
Charge: 0




click to see details on this item
+ (0.000208) cystrnaName: L-Cysteinyl-tRNA(Cys)
Formula: C3H7NOSR
Charge: 1




click to see details on this item
+ (0.085568) glutrnaName: L-Glutamyl-tRNA(Glu)
Formula: C5H8NO3R
Charge: 0




click to see details on this item
+ (0.026184) glntrnaName: L-Glutaminyl-tRNA(Gln)
Formula: C5H10N2O2R
Charge: 1




click to see details on this item
+ (0.074691) glytrnaName: Glycyl-tRNA(Gly)
Formula: C2H5NOR
Charge: 1




click to see details on this item
+ (0.017927) histrnaName: L-Histidyl-tRNA(His)
Formula: C6H9N3OR
Charge: 1




click to see details on this item
+ (0.052143) iletrnaName: L-Isoleucyl-tRNA(Ile)
Formula: C6H13NOR
Charge: 1




click to see details on this item
+ (0.079867) leutrnaName: L-Leucyl-tRNA(Leu)
Formula: C6H13NOR
Charge: 1




click to see details on this item
+ (0.079083) lystrnaName: L-Lysine-tRNA (Lys)
Formula: C6H15N2OR
Charge: 2




click to see details on this item
+ (0.012181) mettrnaName: L-Methionyl-tRNA (Met)
Formula: C5H11NOSR
Charge: 1




click to see details on this item
+ (0.036544) phetrnaName: L-Phenylalanyl-tRNA(Phe)
Formula: C9H11NOR
Charge: 1




click to see details on this item
+ (0.045145) protrnaName: L-Prolyl-tRNA(Pro)
Formula: C5H9NOR
Charge: 1




click to see details on this item
+ (0.051284) sertrnaName: L-Seryl-tRNA(Ser)
Formula: C3H7NO2R
Charge: 1




click to see details on this item
+ (0.052305) thrtrnaName: L-Threonyl-tRNA(Thr)
Formula: C4H9NO2R
Charge: 1




click to see details on this item
+ (0.007259) trptrnaName: L-Tryptophanyl-tRNA(Trp)
Formula: C11H12N2OR
Charge: 1




click to see details on this item
+ (0.027882) tyrtrnaName: L-Tyrosyl-tRNA(Tyr)
Formula: C9H11NO2R
Charge: 1




click to see details on this item
+ (0.071091) valtrnaName: L-Valyl-tRNA(Val)
Formula: C5H11NOR
Charge: 1




click to see details on this item
prot_otherName: Non-mitochondrial protein
Formula: X
Charge: 0




click to see details on this item
+ (2.0) gdpName: GDP
Formula: C10H12N5O11P2
Charge: -3




click to see details on this item
+ (0.324) adpName: ADP
Formula: C10H12N5O10P2
Charge: -3




click to see details on this item
+ (2.324) hName: H+
Formula: H
Charge: 1




click to see details on this item
+ (2.324) piName: Phosphate
Formula: HO4P
Charge: -2




click to see details on this item
+ (0.12769) trnaalaName: tRNA(Ala)
Formula: RH
Charge: 0




click to see details on this item
+ (0.042387) trnaargName: tRNA(Arg)
Formula: RH
Charge: 0




click to see details on this item
+ (0.025739) trnaasnName: tRNA(Asn)
Formula: RH
Charge: 0




click to see details on this item
+ (0.084822) trnaaspName: tRNA(Asp)
Formula: RH
Charge: 0




click to see details on this item
+ (0.000208) trnacysName: tRNA(Cys)
Formula: RH
Charge: 0




click to see details on this item
+ (0.085568) trnagluName: tRNA (Glu)
Formula: RH
Charge: 0




click to see details on this item
+ (0.026184) trnaglnName: tRNA(Gln)
Formula: RH
Charge: 0




click to see details on this item
+ (0.074691) trnaglyName: tRNA(Gly)
Formula: RH
Charge: 0




click to see details on this item
+ (0.017927) trnahisName: tRNA(His)
Formula: RH
Charge: 0




click to see details on this item
+ (0.052143) trnaileName: tRNA(Ile)
Formula: RH
Charge: 0




click to see details on this item
+ (0.079867) trnaleuName: tRNA(Leu)
Formula: RH
Charge: 0




click to see details on this item
+ (0.079083) trnalysName: tRNA(Lys)
Formula: RH
Charge: 0




click to see details on this item
+ (0.012181) trnametName: tRNA(Met)
Formula: RH
Charge: 0




click to see details on this item
+ (0.036544) trnapheName: tRNA(Phe)
Formula: RH
Charge: 0




click to see details on this item
+ (0.045145) trnaproName: tRNA(Pro)
Formula: RH
Charge: 0




click to see details on this item
+ (0.051284) trnaserName: tRNA(Ser)
Formula: RH
Charge: 0




click to see details on this item
+ (0.052305) trnathrName: tRNA(Thr)
Formula: RH
Charge: 0




click to see details on this item
+ (0.007259) trnatrpName: tRNA(Trp)
Formula: RH
Charge: 0




click to see details on this item
+ (0.027882) trnatyrName: tRNA(Tyr)
Formula: RH
Charge: 0




click to see details on this item
+ (0.071091) trnavalName: tRNA(Val)
Formula: RH
Charge: 0




click to see details on this item
Not applicable
Not applicable
[c] : (0.008687) arachdcoaName: C20:4-CoA
Formula: C41H62N7O17P3S
Charge: -4




click to see details on this item
+ (0.02991) fa16p1n7coaName: Palmitoleyl-coA
Formula: C37H60N7O17P3S
Charge: -4




click to see details on this item
+ (0.033888) tmndnccoaName: timnodonyl coenzyme A
Formula: C41H60N7O17P3S
Charge: -4




click to see details on this item
+ (0.070249) odecoaName: Octadecenoyl-CoA (n-C18:1CoA)
Formula: C39H64N7O17P3S
Charge: -4




click to see details on this item
+ (0.016289) eicostetcoaName: eicosatetranoyl coenzyme A
Formula: C41H62N7O17P3S
Charge: -4




click to see details on this item
+ (0.039136) fa17p0isocoaName: Fatty acyl (C17:iso) coa
Formula: C38H64N7O17P3S
Charge: -4




click to see details on this item
+ (0.051607) pmtcoaName: Palmitoyl-CoA (n-C16:0CoA)
Formula: C37H62N7O17P3S
Charge: -4




click to see details on this item
+ (0.041849) stcoaName: Stearoyl-CoA (n-C18:0CoA)
Formula: C39H66N7O17P3S
Charge: -4




click to see details on this item
+ (0.008964) fa24p0coaName: Fatty acyl (C24:0) coa
Formula: C45H78N7O17P3S
Charge: -4




click to see details on this item
+ (0.026969) dlnlcgcoaName: dihomo-gamma-linolenyl coenzyme A
Formula: C41H64N7O17P3S
Charge: -4




click to see details on this item
+ (0.170938) vacccoaName: Vaccenyl coenzyme A
Formula: C39H64N7O17P3S
Charge: -4




click to see details on this item
+ (0.354879) fa17c9coaName: cis-9,10-methylenehexadecanoyl coa
Formula: C38H62N7O17P3S
Charge: -4




click to see details on this item
+ (0.033335) tdcoaName: Tetradecanoyl-CoA (n-C14:0CoA)
Formula: C35H58N7O17P3S
Charge: -4




click to see details on this item
+ (0.077813) fa15p0isocoaName: Fatty acyl (C15:iso) coa
Formula: C36H60N7O17P3S
Charge: -4




click to see details on this item
+ (0.035378) lnlccoaName: linoleic coenzyme A
Formula: C39H62N7O17P3S
Charge: -4




click to see details on this item
+ (0.000111) fa19c11coaName: cis-11,12-methyleneoctadecanoyl coa
Formula: C40H66N7O17P3S
Charge: -4




click to see details on this item
Not applicable
Not applicable
[c] : (0.071255) dlnlcgcoaName: dihomo-gamma-linolenyl coenzyme A
Formula: C41H64N7O17P3S
Charge: -4




click to see details on this item
+ (0.099154) eicostetcoaName: eicosatetranoyl coenzyme A
Formula: C41H62N7O17P3S
Charge: -4




click to see details on this item
+ (0.025021) odecoaName: Octadecenoyl-CoA (n-C18:1CoA)
Formula: C39H64N7O17P3S
Charge: -4




click to see details on this item
+ (0.170596) vacccoaName: Vaccenyl coenzyme A
Formula: C39H64N7O17P3S
Charge: -4




click to see details on this item
+ (0.011369) fa16p1n7coaName: Palmitoleyl-coA
Formula: C37H60N7O17P3S
Charge: -4




click to see details on this item
+ (0.233615) tmndnccoaName: timnodonyl coenzyme A
Formula: C41H60N7O17P3S
Charge: -4




click to see details on this item
+ (0.051383) pmtcoaName: Palmitoyl-CoA (n-C16:0CoA)
Formula: C37H62N7O17P3S
Charge: -4




click to see details on this item
+ (0.080196) fa17c9coaName: cis-9,10-methylenehexadecanoyl coa
Formula: C38H62N7O17P3S
Charge: -4




click to see details on this item
+ (0.030888) fa17p0isocoaName: Fatty acyl (C17:iso) coa
Formula: C38H64N7O17P3S
Charge: -4




click to see details on this item
+ (0.052693) lnlccoaName: linoleic coenzyme A
Formula: C39H62N7O17P3S
Charge: -4




click to see details on this item
+ (0.026371) arachdcoaName: C20:4-CoA
Formula: C41H62N7O17P3S
Charge: -4




click to see details on this item
+ (0.023869) fa15p0isocoaName: Fatty acyl (C15:iso) coa
Formula: C36H60N7O17P3S
Charge: -4




click to see details on this item
+ (0.105017) stcoaName: Stearoyl-CoA (n-C18:0CoA)
Formula: C39H66N7O17P3S
Charge: -4




click to see details on this item
+ (0.008707) fa24p0coaName: Fatty acyl (C24:0) coa
Formula: C45H78N7O17P3S
Charge: -4




click to see details on this item
+ (0.00001) fa19c11coaName: cis-11,12-methyleneoctadecanoyl coa
Formula: C40H66N7O17P3S
Charge: -4




click to see details on this item
+ (0.009855) tdcoaName: Tetradecanoyl-CoA (n-C14:0CoA)
Formula: C35H58N7O17P3S
Charge: -4




click to see details on this item
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
Not applicable
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