WormFlux: mechanistic analysis of C. elegans metabolism

Pathway Overview

Name .....................................................	:	Biomass assembly
Related pathway (?) The pathway found in other databases to which this pathway is related. .....................................................	:	ERROR
Number of reactions .....................................................	:	23

In WormPaths (?) If the pathway is available as a WormPaths map you will find the name and link of map here. .....................................................	:	Not yet represented in WormPaths maps.

iCEL1314

KEGG

MetaCyc

Reactions (?) Click to see these reactions in the related KEGG pathway (only enzymes that are represented in kegg are highlighted).

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

BIO0001Name: Protein synthesis (mitochondrial) Type: Biomass Location: Mitochondria KEGG ID: NA click to see details on this item	Not applicable	[m] : (2.0) gtpName: GTP Formula: C10H12N5O14P3 Charge: -4 click to see details on this item + (0.324) atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + (2.324) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + (0.111867) alatrnaName: L-Alanyl-tRNA(Ala) Formula: C3H7NO2R Charge: 1 click to see details on this item + (0.048846) argtrnaName: L-Arginyl-tRNA(Arg) Formula: C6H15N4O2R Charge: 2 click to see details on this item + (0.035405) asntrnaName: L-Asparaginyl-tRNA(Asn) Formula: C4H8N2O3R Charge: 1 click to see details on this item + (0.064946) asptrnaName: L-Aspartyl-tRNA(Asp) Formula: C4H6NO4R Charge: 0 click to see details on this item + (0.008665) cystrnaName: L-Cysteinyl-tRNA(Cys) Formula: C3H7NO2SR Charge: 1 click to see details on this item + (0.067386) glutrnaName: L-Glutamyl-tRNA(Glu) Formula: C5H8NO4R Charge: 0 click to see details on this item + (0.037694) glntrnaName: L-Glutaminyl-tRNA(Gln) Formula: C5H10N2O3R Charge: 1 click to see details on this item + (0.094618) glytrnaName: Glycyl-tRNA(Gly) Formula: C2H5NO2R Charge: 1 click to see details on this item + (0.01782) histrnaName: L-Histidyl-tRNA(His) Formula: C6H9N3O2R Charge: 1 click to see details on this item + (0.053231) iletrnaName: L-Isoleucyl-tRNA(Ile) Formula: C6H13NO2R Charge: 1 click to see details on this item + (0.082051) leutrnaName: L-Leucyl-tRNA(Leu) Formula: C6H13NO2R Charge: 1 click to see details on this item + (0.071622) lystrnaName: L-Lysine-tRNA (Lys) Formula: C6H15N2O2R Charge: 2 click to see details on this item + (0.020458) mettrnaName: L-Methionyl-tRNA (Met) Formula: C5H11NO2SR Charge: 1 click to see details on this item + (0.035592) phetrnaName: L-Phenylalanyl-tRNA(Phe) Formula: C9H11NO2R Charge: 1 click to see details on this item + (0.043238) protrnaName: L-Prolyl-tRNA(Pro) Formula: C5H9NO2R Charge: 1 click to see details on this item + (0.045815) sertrnaName: L-Seryl-tRNA(Ser) Formula: C3H7NO3R Charge: 1 click to see details on this item + (0.049868) thrtrnaName: L-Threonyl-tRNA(Thr) Formula: C4H9NO3R Charge: 1 click to see details on this item + (0.008944) trptrnaName: L-Tryptophanyl-tRNA(Trp) Formula: C11H12N2O2R Charge: 1 click to see details on this item + (0.026832) tyrtrnaName: L-Tyrosyl-tRNA(Tyr) Formula: C9H11NO3R Charge: 1 click to see details on this item + (0.075105) valtrnaName: L-Valyl-tRNA(Val) Formula: C5H11NO2R Charge: 1 click to see details on this item	prot_mitoName: Mitochondrial protein Formula: X Charge: 0 click to see details on this item + (2.0) gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + (0.324) adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + (3.324) hName: H+ Formula: H Charge: 1 click to see details on this item + (2.324) piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item + (0.111867) trnaalaName: tRNA(Ala) Formula: ROH Charge: 0 click to see details on this item + (0.048846) trnaargName: tRNA(Arg) Formula: ROH Charge: 0 click to see details on this item + (0.035405) trnaasnName: tRNA(Asn) Formula: ROH Charge: 0 click to see details on this item + (0.064946) trnaaspName: tRNA(Asp) Formula: ROH Charge: 0 click to see details on this item + (0.008665) trnacysName: tRNA(Cys) Formula: ROH Charge: 0 click to see details on this item + (0.067386) trnagluName: tRNA (Glu) Formula: ROH Charge: 0 click to see details on this item + (0.037694) trnaglnName: tRNA(Gln) Formula: ROH Charge: 0 click to see details on this item + (0.094618) trnaglyName: tRNA(Gly) Formula: ROH Charge: 0 click to see details on this item + (0.01782) trnahisName: tRNA(His) Formula: ROH Charge: 0 click to see details on this item + (0.053231) trnaileName: tRNA(Ile) Formula: ROH Charge: 0 click to see details on this item + (0.082051) trnaleuName: tRNA(Leu) Formula: ROH Charge: 0 click to see details on this item + (0.071622) trnalysName: tRNA(Lys) Formula: ROH Charge: 0 click to see details on this item + (0.020458) trnametName: tRNA(Met) Formula: ROH Charge: 0 click to see details on this item + (0.035592) trnapheName: tRNA(Phe) Formula: ROH Charge: 0 click to see details on this item + (0.043238) trnaproName: tRNA(Pro) Formula: ROH Charge: 0 click to see details on this item + (0.045815) trnaserName: tRNA(Ser) Formula: ROH Charge: 0 click to see details on this item + (0.049868) trnathrName: tRNA(Thr) Formula: ROH Charge: 0 click to see details on this item + (0.008944) trnatrpName: tRNA(Trp) Formula: ROH Charge: 0 click to see details on this item + (0.026832) trnatyrName: tRNA(Tyr) Formula: ROH Charge: 0 click to see details on this item + (0.075105) trnavalName: tRNA(Val) Formula: ROH Charge: 0 click to see details on this item	Not applicable	Biomass assembly
BIO0002Name: Protein synthesis (cytoplasmic) Type: Biomass Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : (2.0) gtpName: GTP Formula: C10H12N5O14P3 Charge: -4 click to see details on this item + (0.324) atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + (2.324) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + (0.12769) alatrnaName: L-Alanyl-tRNA(Ala) Formula: C3H7NO2R Charge: 1 click to see details on this item + (0.042387) argtrnaName: L-Arginyl-tRNA(Arg) Formula: C6H15N4O2R Charge: 2 click to see details on this item + (0.025739) asntrnaName: L-Asparaginyl-tRNA(Asn) Formula: C4H8N2O3R Charge: 1 click to see details on this item + (0.084822) asptrnaName: L-Aspartyl-tRNA(Asp) Formula: C4H6NO4R Charge: 0 click to see details on this item + (0.000208) cystrnaName: L-Cysteinyl-tRNA(Cys) Formula: C3H7NO2SR Charge: 1 click to see details on this item + (0.085568) glutrnaName: L-Glutamyl-tRNA(Glu) Formula: C5H8NO4R Charge: 0 click to see details on this item + (0.026184) glntrnaName: L-Glutaminyl-tRNA(Gln) Formula: C5H10N2O3R Charge: 1 click to see details on this item + (0.074691) glytrnaName: Glycyl-tRNA(Gly) Formula: C2H5NO2R Charge: 1 click to see details on this item + (0.017927) histrnaName: L-Histidyl-tRNA(His) Formula: C6H9N3O2R Charge: 1 click to see details on this item + (0.052143) iletrnaName: L-Isoleucyl-tRNA(Ile) Formula: C6H13NO2R Charge: 1 click to see details on this item + (0.079867) leutrnaName: L-Leucyl-tRNA(Leu) Formula: C6H13NO2R Charge: 1 click to see details on this item + (0.079083) lystrnaName: L-Lysine-tRNA (Lys) Formula: C6H15N2O2R Charge: 2 click to see details on this item + (0.012181) mettrnaName: L-Methionyl-tRNA (Met) Formula: C5H11NO2SR Charge: 1 click to see details on this item + (0.036544) phetrnaName: L-Phenylalanyl-tRNA(Phe) Formula: C9H11NO2R Charge: 1 click to see details on this item + (0.045145) protrnaName: L-Prolyl-tRNA(Pro) Formula: C5H9NO2R Charge: 1 click to see details on this item + (0.051284) sertrnaName: L-Seryl-tRNA(Ser) Formula: C3H7NO3R Charge: 1 click to see details on this item + (0.052305) thrtrnaName: L-Threonyl-tRNA(Thr) Formula: C4H9NO3R Charge: 1 click to see details on this item + (0.007259) trptrnaName: L-Tryptophanyl-tRNA(Trp) Formula: C11H12N2O2R Charge: 1 click to see details on this item + (0.027882) tyrtrnaName: L-Tyrosyl-tRNA(Tyr) Formula: C9H11NO3R Charge: 1 click to see details on this item + (0.071091) valtrnaName: L-Valyl-tRNA(Val) Formula: C5H11NO2R Charge: 1 click to see details on this item	prot_otherName: Non-mitochondrial protein Formula: X Charge: 0 click to see details on this item + (2.0) gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + (0.324) adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + (3.324) hName: H+ Formula: H Charge: 1 click to see details on this item + (2.324) piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item + (0.12769) trnaalaName: tRNA(Ala) Formula: ROH Charge: 0 click to see details on this item + (0.042387) trnaargName: tRNA(Arg) Formula: ROH Charge: 0 click to see details on this item + (0.025739) trnaasnName: tRNA(Asn) Formula: ROH Charge: 0 click to see details on this item + (0.084822) trnaaspName: tRNA(Asp) Formula: ROH Charge: 0 click to see details on this item + (0.000208) trnacysName: tRNA(Cys) Formula: ROH Charge: 0 click to see details on this item + (0.085568) trnagluName: tRNA (Glu) Formula: ROH Charge: 0 click to see details on this item + (0.026184) trnaglnName: tRNA(Gln) Formula: ROH Charge: 0 click to see details on this item + (0.074691) trnaglyName: tRNA(Gly) Formula: ROH Charge: 0 click to see details on this item + (0.017927) trnahisName: tRNA(His) Formula: ROH Charge: 0 click to see details on this item + (0.052143) trnaileName: tRNA(Ile) Formula: ROH Charge: 0 click to see details on this item + (0.079867) trnaleuName: tRNA(Leu) Formula: ROH Charge: 0 click to see details on this item + (0.079083) trnalysName: tRNA(Lys) Formula: ROH Charge: 0 click to see details on this item + (0.012181) trnametName: tRNA(Met) Formula: ROH Charge: 0 click to see details on this item + (0.036544) trnapheName: tRNA(Phe) Formula: ROH Charge: 0 click to see details on this item + (0.045145) trnaproName: tRNA(Pro) Formula: ROH Charge: 0 click to see details on this item + (0.051284) trnaserName: tRNA(Ser) Formula: ROH Charge: 0 click to see details on this item + (0.052305) trnathrName: tRNA(Thr) Formula: ROH Charge: 0 click to see details on this item + (0.007259) trnatrpName: tRNA(Trp) Formula: ROH Charge: 0 click to see details on this item + (0.027882) trnatyrName: tRNA(Tyr) Formula: ROH Charge: 0 click to see details on this item + (0.071091) trnavalName: tRNA(Val) Formula: ROH Charge: 0 click to see details on this item	Not applicable	Biomass assembly
BIO0003Name: RNA synthesis Type: Biomass Location: Cytosol KEGG ID: R00444;R00435 click to see details on this item	2.7.7.19Name: polynucleotide adenylyltransferase Other names: NTP polymerase, RNA adenylating enzyme, AMP polynucleotidylexotransferase, ATP-polynucleotide adenylyltransferase, ATP:polynucleotidylexotransferase, poly(A) polymerase, poly(A) synthetase, polyadenylate nucleotidyltransferase, polyadenylate polymerase, polyadenylate synthetase, polyadenylic acid polymerase, polyadenylic polymerase, terminal riboadenylate transferase, poly(A) hydrolase, RNA formation factors, PF1, adenosine triphosphate:ribonucleic acid adenylyltransferase click to see details on this item 2.7.7.6Name: DNA-directed RNA polymerase Other names: RNA polymerase, RNA nucleotidyltransferase (DNA-directed), RNA polymerase I, RNA polymerase II, RNA polymerase III, C RNA formation factors, deoxyribonucleic acid-dependent ribonucleic acid polymerase, DNA-dependent ribonucleate nucleotidyltransferase, DNA-dependent RNA nucleotidyltransferase, DNA-dependent RNA polymerase, ribonucleate nucleotidyltransferase, ribonucleate polymerase, C ribonucleic acid formation factors, ribonucleic acid nucleotidyltransferase, ribonucleic acid polymerase, ribonucleic acid transcriptase, ribonucleic polymerase, ribonucleic transcriptase, RNA nucleotidyltransferase, RNA transcriptase, transcriptase, RNA nucleotidyltransferase I click to see details on this item	[c] : (0.639534) atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + (0.228426) ctpName: CTP Formula: C9H12N3O14P3 Charge: -4 click to see details on this item + (0.233503) gtpName: GTP Formula: C10H12N5O14P3 Charge: -4 click to see details on this item + (0.304569) utpName: UTP Formula: C9H11N2O15P3 Charge: -4 click to see details on this item + (0.406032) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item	RNAName: RNA (biomass) Formula: X Charge: 0 click to see details on this item + ppiName: Diphosphate Formula: HO7P2 Charge: -3 click to see details on this item + (0.406032) adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + (0.406032) piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item + (0.406032) hName: H+ Formula: H Charge: 1 click to see details on this item	[(F43G6.5 \| T15H9.6 \| pap-1) & gld-2 & gld-4] & (rpoa-1 & rpoa-2 & ama-1 & rpb-2 & rpc-1 & rpc-2 & rpom-1 & rpb-3 & rpb-4 & rpb-5 & rpb-6 & rpb-7 & rpb-8 & rpb-9 & rpb-10 & rpb-11 & rpc-11 & rpoa-12 & rpb-12 & rpac-19 & rpac-40 & rpc-25 & let-611 & Y47G6A.9 & W09C3.4 & F26E4.4 & W06E11.1)	Biomass assembly
BIO0004Name: DNA synthesis Type: Biomass Location: Cytosol KEGG ID: R00379 click to see details on this item	2.7.7.7Name: DNA-directed DNA polymerase Other names: DNA polymerase I, DNA polymerase II, DNA polymerase III, DNA polymerase alpha, DNA polymerase beta, DNA polymerase gamma, DNA nucleotidyltransferase (DNA-directed), DNA nucleotidyltransferase (DNA-directed), deoxyribonucleate nucleotidyltransferase, deoxynucleate polymerase, deoxyribonucleic acid duplicase, deoxyribonucleic acid polymerase, deoxyribonucleic duplicase, deoxyribonucleic polymerase, deoxyribonucleic polymerase I, DNA duplicase, DNA nucleotidyltransferase, DNA polymerase, DNA replicase, DNA-dependent DNA polymerase, duplicase, Klenow fragment, sequenase, Taq DNA polymerase, Taq Pol I, Tca DNA polymerase click to see details on this item	[c] : (0.325) datpName: dATP Formula: C10H12N5O12P3 Charge: -4 click to see details on this item + (0.175) dctpName: dCTP Formula: C9H12N3O13P3 Charge: -4 click to see details on this item + (0.175) dgtpName: dGTP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + (0.325) dttpName: dTTP Formula: C10H13N2O14P3 Charge: -4 click to see details on this item + (0.368) atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + (0.368) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item	DNAName: DNA (biomass) Formula: X Charge: 0 click to see details on this item + ppiName: Diphosphate Formula: HO7P2 Charge: -3 click to see details on this item + (0.368) adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + (0.368) piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item + (0.368) hName: H+ Formula: H Charge: 1 click to see details on this item	Y47D3A.29 & pole-1 & pole-2 & F10C2.4 & K04C2.2 & polg-1 & (polq-1 \| helq-1) & Y37B11A.2 & Y53F4B.3 & polh-1 & polk-1 & T26A5.8 & div-1 & F12F6.7 & (pri-1 \| T24C4.5) & pri-2 & R04F11.3	Biomass assembly
BIO0005Name: Fatty acid conversions (Rtotal3) Type: Biomass Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : (0.008687) arachdcoaName: C20:4-CoA Formula: C41H62N7O17P3S Charge: -4 click to see details on this item + (0.02991) fa16p1n7coaName: Palmitoleyl-coA Formula: C37H60N7O17P3S Charge: -4 click to see details on this item + (0.033888) tmndnccoaName: timnodonyl coenzyme A Formula: C41H60N7O17P3S Charge: -4 click to see details on this item + (0.070249) odecoaName: Octadecenoyl-CoA (n-C18:1CoA) Formula: C39H64N7O17P3S Charge: -4 click to see details on this item + (0.016289) eicostetcoaName: eicosatetranoyl coenzyme A Formula: C41H62N7O17P3S Charge: -4 click to see details on this item + (0.039136) fa17p0isocoaName: Fatty acyl (C17:iso) coa Formula: C38H64N7O17P3S Charge: -4 click to see details on this item + (0.051607) pmtcoaName: Palmitoyl-CoA (n-C16:0CoA) Formula: C37H62N7O17P3S Charge: -4 click to see details on this item + (0.041849) stcoaName: Stearoyl-CoA (n-C18:0CoA) Formula: C39H66N7O17P3S Charge: -4 click to see details on this item + (0.026969) dlnlcgcoaName: dihomo-gamma-linolenyl coenzyme A Formula: C41H64N7O17P3S Charge: -4 click to see details on this item + (0.170938) vacccoaName: Vaccenyl coenzyme A Formula: C39H64N7O17P3S Charge: -4 click to see details on this item + (0.354879) fa17c9coaName: cis-9,10-methylenehexadecanoyl coa Formula: C38H62N7O17P3S Charge: -4 click to see details on this item + (0.033335) tdcoaName: Tetradecanoyl-CoA (n-C14:0CoA) Formula: C35H58N7O17P3S Charge: -4 click to see details on this item + (0.077813) fa15p0isocoaName: Fatty acyl (C15:iso) coa Formula: C36H60N7O17P3S Charge: -4 click to see details on this item + (0.035378) lnlccoaName: linoleic coenzyme A Formula: C39H62N7O17P3S Charge: -4 click to see details on this item + (0.008964) lgnccoaName: lignocericyl coenzyme A Formula: C45H78N7O17P3S Charge: -4 click to see details on this item + (0.000111) fa19c11coaName: cis-11,12-methyleneoctadecanoyl coa Formula: C40H66N7O17P3S Charge: -4 click to see details on this item	Rtotal3coaName: R total 3 Coenzyme A Formula: CO2FULLR3C21H31N7O15P3S Charge: -4 click to see details on this item	Not applicable	Biomass assembly
BIO0006Name: Fatty acid conversions (Rtotal) Type: Biomass Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : (0.071255) dlnlcgcoaName: dihomo-gamma-linolenyl coenzyme A Formula: C41H64N7O17P3S Charge: -4 click to see details on this item + (0.099154) eicostetcoaName: eicosatetranoyl coenzyme A Formula: C41H62N7O17P3S Charge: -4 click to see details on this item + (0.025021) odecoaName: Octadecenoyl-CoA (n-C18:1CoA) Formula: C39H64N7O17P3S Charge: -4 click to see details on this item + (0.170596) vacccoaName: Vaccenyl coenzyme A Formula: C39H64N7O17P3S Charge: -4 click to see details on this item + (0.008707) lgnccoaName: lignocericyl coenzyme A Formula: C45H78N7O17P3S Charge: -4 click to see details on this item + (0.011369) fa16p1n7coaName: Palmitoleyl-coA Formula: C37H60N7O17P3S Charge: -4 click to see details on this item + (0.233615) tmndnccoaName: timnodonyl coenzyme A Formula: C41H60N7O17P3S Charge: -4 click to see details on this item + (0.051383) pmtcoaName: Palmitoyl-CoA (n-C16:0CoA) Formula: C37H62N7O17P3S Charge: -4 click to see details on this item + (0.080196) fa17c9coaName: cis-9,10-methylenehexadecanoyl coa Formula: C38H62N7O17P3S Charge: -4 click to see details on this item + (0.030888) fa17p0isocoaName: Fatty acyl (C17:iso) coa Formula: C38H64N7O17P3S Charge: -4 click to see details on this item + (0.052693) lnlccoaName: linoleic coenzyme A Formula: C39H62N7O17P3S Charge: -4 click to see details on this item + (0.00001) fa19c11coaName: cis-11,12-methyleneoctadecanoyl coa Formula: C40H66N7O17P3S Charge: -4 click to see details on this item + (0.026371) arachdcoaName: C20:4-CoA Formula: C41H62N7O17P3S Charge: -4 click to see details on this item + (0.023869) fa15p0isocoaName: Fatty acyl (C15:iso) coa Formula: C36H60N7O17P3S Charge: -4 click to see details on this item + (0.105017) stcoaName: Stearoyl-CoA (n-C18:0CoA) Formula: C39H66N7O17P3S Charge: -4 click to see details on this item + (0.009855) tdcoaName: Tetradecanoyl-CoA (n-C14:0CoA) Formula: C35H58N7O17P3S Charge: -4 click to see details on this item	RtotalcoaName: R total Coenzyme A Formula: CO2FULLRC21H31N7O15P3S Charge: -4 click to see details on this item	Not applicable	Biomass assembly
BIO0007Name: Fatty acid conversions (Rtotal7) Type: Biomass Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : ocdcaName: octadecanoate (n-C18:0) Formula: C18H35O2 Charge: -1 click to see details on this item	Rtotal7Name: R total 7 Formula: C2H2O2R Charge: -1 click to see details on this item	Not applicable	Biomass assembly
BIO0008Name: Phospholipids assembly Type: Biomass Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : (0.079557) sphmyln_ceName: Sphingomyelin Formula: C24H50N2O5PFULLRCO Charge: 0 click to see details on this item + (0.015693) pailName: Phosphatidylinositol Formula: C9H16O9PFULLRCO2FULLR2CO2 Charge: -1 click to see details on this item + (0.015689) lpcholName: Lysophosphatidylcholine Formula: C8H19NO5PFULLRCO2 Charge: 0 click to see details on this item + (0.076233) alkenac2gpeName: 1-alkenyl 2-acylglycerol 3-phosphoethanolamine plasmalogen Formula: C6H12NO7PRRC2H2 Charge: 0 click to see details on this item + (0.108903) akac2gpeName: 1-alkyl 2-acylglycerol 3-phosphoethanolamine Formula: C6H12O7NPRRC2H4 Charge: 0 click to see details on this item + (0.313837) pcholName: Phosphatidylcholine Formula: C8H18NO4PFULLRCO2FULLR2CO2 Charge: 0 click to see details on this item + (0.359684) peName: Phosphatidylethanolamine Formula: C5H12NO4PFULLRCO2FULLR2CO2 Charge: 0 click to see details on this item + (0.015696) clpnName: Cardiolipin Formula: C9H16O9P2FULLRCO2FULLR2CO2FULLRCO2FULLR2CO2 Charge: -2 click to see details on this item + (0.005009) psName: Phosphatidylserine Formula: C6H11NO6PFULLRCO2FULLR2CO2 Charge: -1 click to see details on this item + (0.009698) akac2gcholName: 1-alkyl 2-acylglycerol 3-phosphocholine Formula: C9H18NO7PRRC2H4 Charge: 0 click to see details on this item	PhosphoLName: Phospholipids Formula: X Charge: 0 click to see details on this item	Not applicable	Biomass assembly
BIO0009Name: Glycan pooling Type: Biomass Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : (0.028141) m4masnName: (alpha-D-mannosyl)4-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein) Formula: C46H77N2O35X Charge: 0 click to see details on this item + (0.013612) nm3masnName: M4Gn3 Formula: C48H80N3O35X Charge: 0 click to see details on this item + (0.03835) m2masnName: MM Formula: C34H57N2O25X Charge: 0 click to see details on this item + (0.032462) m3masnName: M4Gn2 Formula: C40H67N2O30X Charge: 0 click to see details on this item + (0.01185) fn2m2masnName: N4-{N-Acetyl-beta-D-glucosaminyl-(1,2)-alpha-D-mannosyl-(1,3)-[N-acetyl-beta-D-glucosaminyl-(1,2)-alpha-D-mannosyl-(1,6)]-beta-D-mannosyl-(1,4)-N-acetyl-beta-D-glucosaminyl-(1,4)-[alpha-L-fucosyl-(1,6)]-N-acetyl-beta-D-glucosaminyl}asparagine Formula: C56H93N4O39X Charge: 0 click to see details on this item + (0.843482) chitinName: Chitin (monomer) Formula: C8H13NO5 Charge: 0 click to see details on this item + (0.01648) fm2masnName: MMFuc Formula: C40H67N2O29X Charge: 0 click to see details on this item + (0.015623) nm2masnName: (N-acetyl-D-glucosaminyl-(alpha-D-mannosyl)2-beta-D-mannosyl-diacetylchitobiosyl)-L-asparagine (protein) Formula: C42H70N3O30X Charge: 0 click to see details on this item	GlycansName: Glycan pool Formula: X Charge: 0 click to see details on this item + (0.156518) asn-LName: L-Asparagine Formula: C4H8N2O3 Charge: 0 click to see details on this item	Not applicable	Biomass assembly
BIO0010Name: Drain of Biomass Type: Biomass Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : BiomassName: Body Biomass Formula: X Charge: 0 click to see details on this item + (16.0) atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + (16.0) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item	(16.0) adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + (16.0) hName: H+ Formula: H Charge: 1 click to see details on this item + (16.0) piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item	Not applicable	Biomass assembly
BIO0011Name: Fatty acid composition (phospholipids) Type: Biomass Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : RtotalcoaName: R total Coenzyme A Formula: CO2FULLRC21H31N7O15P3S Charge: -4 click to see details on this item	Rtotal2coaName: R total 2 coenzyme A Formula: CO2FULLR2C21H31N7O15P3S Charge: -4 click to see details on this item	Not applicable	Biomass assembly
BIO0012Name: Fatty acid composition (TAG) Type: Biomass Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : Rtotal3coaName: R total 3 Coenzyme A Formula: CO2FULLR3C21H31N7O15P3S Charge: -4 click to see details on this item	Rtotal4coaName: R total 4 coenzyme A Formula: CO2FULLR4C21H31N7O15P3S Charge: -4 click to see details on this item	Not applicable	Biomass assembly
BIO0013Name: Fatty acid composition (TAG) Type: Biomass Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : Rtotal3coaName: R total 3 Coenzyme A Formula: CO2FULLR3C21H31N7O15P3S Charge: -4 click to see details on this item	Rtotal5coaName: R total 5 coenzyme A Formula: CO2FULLR5C21H31N7O15P3S Charge: -4 click to see details on this item	Not applicable	Biomass assembly
BIO0014Name: Fatty acid composition (Ether-lipid acyl) Type: Biomass Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : RtotalcoaName: R total Coenzyme A Formula: CO2FULLRC21H31N7O15P3S Charge: -4 click to see details on this item	Rtotal6coaName: R total 6 Coenzyme A Formula: CO2RC21H31N7O15P3S Charge: -4 click to see details on this item	Not applicable	Biomass assembly
BIO0015Name: Assembly of minor components of biomass Type: Biomass Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	protSfarName: S-Farnesyl protein Formula: C20H33N2O3SR(C2H2NOR)n(C2H2NOR)n Charge: 0 click to see details on this item[c] + protSgerCName: Protein C-terminal S-geranylgeranyl-L-cysteine Formula: C25H41N2O3SR(C2H2NOR)n Charge: 0 click to see details on this item[c] + hemeproteinName: Hemeprotein Formula: C34H30FeN4O4X Charge: 0 click to see details on this item[c] + protSfarCmetName: Protein C-terminal S-farnesyl-L-cysteine methyl ester Formula: C21H35N2O3SR(C2H2NOR)n Charge: 0 click to see details on this item[c] + protSgerName: S-geranylgeranyl protein Formula: C25H41N2O3SR(C2H2NOR)n(C2H2NOR)n Charge: 0 click to see details on this item[c] + (4.0) pepdName: Peptide Formula: C2H4NO2R(C2H2NOR)n Charge: 0 click to see details on this item[c] + protSfarCName: Protein C-terminal S-farnesyl-L-cysteine Formula: C20H33N2O3SR(C2H2NOR)n Charge: 0 click to see details on this item[c] + focytCName: Ferrocytochrome C Formula: C42H42FeN8O8S2R4 Charge: 0 click to see details on this item[m] + protSgerCmetName: Protein C-terminal S-geranylgeranyl-L-cysteine methyl ester Formula: C26H43N2O3SR(C2H2NOR)n Charge: 0 click to see details on this item[c] + ISclustprotName: Iron-sulfur cluster protein Formula: XFe2S2 Charge: 6 click to see details on this item[m]	biomass_minorName: Minor components of biomass Formula: X Charge: 0 click to see details on this item[c] + apoISclustprotName: apo iron-sulfur cluster protein Formula: X Charge: 0 click to see details on this item[m] + apocytcName: Apo cytochrome C Formula: C8H12N4O4S2R4 Charge: 0 click to see details on this item[m] + apohemeproteinName: Apohemeprotein Formula: X Charge: 0 click to see details on this item[c] + (6.0) protCysName: Protein-cysteine Formula: C5H9N2O3SR(C2H2NOR)n(C2H2NOR)n Charge: 0 click to see details on this item[c]	Not applicable	Biomass assembly
BIO0100Name: Assembly of biomass (without DNA) Type: Biomass Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	(0.202508) collgName: Collagen Formula: X Charge: 0 click to see details on this item[c] + (0.204599) glycogenName: glycogen Formula: C6H10O5 Charge: 0 click to see details on this item[c] + (0.058654) GlycansName: Glycan pool Formula: X Charge: 0 click to see details on this item[c] + (0.188823) RNAName: RNA (biomass) Formula: X Charge: 0 click to see details on this item[c] + (0.129849) PhosphoLName: Phospholipids Formula: X Charge: 0 click to see details on this item[c] + (0.029368) treName: Trehalose Formula: C12H22O11 Charge: 0 click to see details on this item[c] + (0.0001) biomass_minorName: Minor components of biomass Formula: X Charge: 0 click to see details on this item[c] + (1.152647) prot_mitoName: Mitochondrial protein Formula: X Charge: 0 click to see details on this item[m] + (0.117468) tagName: triacylglycerol Formula: C3H5FULLR4CO2FULLR5CO2FULLR3CO2 Charge: 0 click to see details on this item[c] + (4.028712) prot_otherName: Non-mitochondrial protein Formula: X Charge: 0 click to see details on this item[c]	BiomassName: Body Biomass Formula: X Charge: 0 click to see details on this item[c]	Not applicable	Biomass assembly
BIO0101Name: Assembly of biomass (without DNA or storage) Type: Biomass Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	(0.238613) collgName: Collagen Formula: X Charge: 0 click to see details on this item[c] + (0.069111) GlycansName: Glycan pool Formula: X Charge: 0 click to see details on this item[c] + (0.222489) RNAName: RNA (biomass) Formula: X Charge: 0 click to see details on this item[c] + (0.153) PhosphoLName: Phospholipids Formula: X Charge: 0 click to see details on this item[c] + (0.0001) biomass_minorName: Minor components of biomass Formula: X Charge: 0 click to see details on this item[c] + (1.358154) prot_mitoName: Mitochondrial protein Formula: X Charge: 0 click to see details on this item[m] + (4.746997) prot_otherName: Non-mitochondrial protein Formula: X Charge: 0 click to see details on this item[c]	BiomassName: Body Biomass Formula: X Charge: 0 click to see details on this item[c]	Not applicable	Biomass assembly
BIO0102Name: Assembly of biomass (without collagen) Type: Biomass Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	(0.016249) DNAName: DNA (biomass) Formula: X Charge: 0 click to see details on this item[c] + (0.203528) glycogenName: glycogen Formula: C6H10O5 Charge: 0 click to see details on this item[c] + (0.058347) GlycansName: Glycan pool Formula: X Charge: 0 click to see details on this item[c] + (0.187835) RNAName: RNA (biomass) Formula: X Charge: 0 click to see details on this item[c] + (0.129169) PhosphoLName: Phospholipids Formula: X Charge: 0 click to see details on this item[c] + (0.029215) treName: Trehalose Formula: C12H22O11 Charge: 0 click to see details on this item[c] + (0.0001) biomass_minorName: Minor components of biomass Formula: X Charge: 0 click to see details on this item[c] + (1.146612) prot_mitoName: Mitochondrial protein Formula: X Charge: 0 click to see details on this item[m] + (0.116853) tagName: triacylglycerol Formula: C3H5FULLR4CO2FULLR5CO2FULLR3CO2 Charge: 0 click to see details on this item[c] + (4.580136) prot_otherName: Non-mitochondrial protein Formula: X Charge: 0 click to see details on this item[c]	BiomassName: Body Biomass Formula: X Charge: 0 click to see details on this item[c]	Not applicable	Biomass assembly
BIO0103Name: Assembly of biomass (without storage) Type: Biomass Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	(0.237144) collgName: Collagen Formula: X Charge: 0 click to see details on this item[c] + (0.019129) DNAName: DNA (biomass) Formula: X Charge: 0 click to see details on this item[c] + (0.068686) GlycansName: Glycan pool Formula: X Charge: 0 click to see details on this item[c] + (0.221119) RNAName: RNA (biomass) Formula: X Charge: 0 click to see details on this item[c] + (0.152058) PhosphoLName: Phospholipids Formula: X Charge: 0 click to see details on this item[c] + (0.0001) biomass_minorName: Minor components of biomass Formula: X Charge: 0 click to see details on this item[c] + (1.349791) prot_mitoName: Mitochondrial protein Formula: X Charge: 0 click to see details on this item[m] + (4.717767) prot_otherName: Non-mitochondrial protein Formula: X Charge: 0 click to see details on this item[c]	BiomassName: Body Biomass Formula: X Charge: 0 click to see details on this item[c]	Not applicable	Biomass assembly
BIO0104Name: Assembly of biomass (without DNA or collagen) Type: Biomass Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	(0.204599) glycogenName: glycogen Formula: C6H10O5 Charge: 0 click to see details on this item[c] + (0.058654) GlycansName: Glycan pool Formula: X Charge: 0 click to see details on this item[c] + (0.188823) RNAName: RNA (biomass) Formula: X Charge: 0 click to see details on this item[c] + (0.129849) PhosphoLName: Phospholipids Formula: X Charge: 0 click to see details on this item[c] + (0.029368) treName: Trehalose Formula: C12H22O11 Charge: 0 click to see details on this item[c] + (0.0001) biomass_minorName: Minor components of biomass Formula: X Charge: 0 click to see details on this item[c] + (1.152647) prot_mitoName: Mitochondrial protein Formula: X Charge: 0 click to see details on this item[m] + (0.117468) tagName: triacylglycerol Formula: C3H5FULLR4CO2FULLR5CO2FULLR3CO2 Charge: 0 click to see details on this item[c] + (4.604242) prot_otherName: Non-mitochondrial protein Formula: X Charge: 0 click to see details on this item[c]	BiomassName: Body Biomass Formula: X Charge: 0 click to see details on this item[c]	Not applicable	Biomass assembly
BIO0105Name: Assembly of biomass (without storage or collagen) Type: Biomass Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	(0.019129) DNAName: DNA (biomass) Formula: X Charge: 0 click to see details on this item[c] + (0.068686) GlycansName: Glycan pool Formula: X Charge: 0 click to see details on this item[c] + (0.221119) RNAName: RNA (biomass) Formula: X Charge: 0 click to see details on this item[c] + (0.152058) PhosphoLName: Phospholipids Formula: X Charge: 0 click to see details on this item[c] + (0.0001) biomass_minorName: Minor components of biomass Formula: X Charge: 0 click to see details on this item[c] + (1.349791) prot_mitoName: Mitochondrial protein Formula: X Charge: 0 click to see details on this item[m] + (5.391734) prot_otherName: Non-mitochondrial protein Formula: X Charge: 0 click to see details on this item[c]	BiomassName: Body Biomass Formula: X Charge: 0 click to see details on this item[c]	Not applicable	Biomass assembly
BIO0106Name: Assembly of biomass (without DNA, storage, or collagen) Type: Biomass Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	(0.069111) GlycansName: Glycan pool Formula: X Charge: 0 click to see details on this item[c] + (0.222489) RNAName: RNA (biomass) Formula: X Charge: 0 click to see details on this item[c] + (0.153) PhosphoLName: Phospholipids Formula: X Charge: 0 click to see details on this item[c] + (0.0001) biomass_minorName: Minor components of biomass Formula: X Charge: 0 click to see details on this item[c] + (1.358154) prot_mitoName: Mitochondrial protein Formula: X Charge: 0 click to see details on this item[m] + (5.42514) prot_otherName: Non-mitochondrial protein Formula: X Charge: 0 click to see details on this item[c]	BiomassName: Body Biomass Formula: X Charge: 0 click to see details on this item[c]	Not applicable	Biomass assembly
BIO0107Name: Assembly of biomass (all components included) Type: Biomass Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	(0.201448) collgName: Collagen Formula: X Charge: 0 click to see details on this item[c] + (0.016249) DNAName: DNA (biomass) Formula: X Charge: 0 click to see details on this item[c] + (0.203528) glycogenName: glycogen Formula: C6H10O5 Charge: 0 click to see details on this item[c] + (0.058347) GlycansName: Glycan pool Formula: X Charge: 0 click to see details on this item[c] + (0.187835) RNAName: RNA (biomass) Formula: X Charge: 0 click to see details on this item[c] + (0.129169) PhosphoLName: Phospholipids Formula: X Charge: 0 click to see details on this item[c] + (0.029215) treName: Trehalose Formula: C12H22O11 Charge: 0 click to see details on this item[c] + (0.0001) biomass_minorName: Minor components of biomass Formula: X Charge: 0 click to see details on this item[c] + (1.146612) prot_mitoName: Mitochondrial protein Formula: X Charge: 0 click to see details on this item[m] + (0.116853) tagName: triacylglycerol Formula: C3H5FULLR4CO2FULLR5CO2FULLR3CO2 Charge: 0 click to see details on this item[c] + (4.007619) prot_otherName: Non-mitochondrial protein Formula: X Charge: 0 click to see details on this item[c]	BiomassName: Body Biomass Formula: X Charge: 0 click to see details on this item[c]	Not applicable	Biomass assembly

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