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  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
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Network Biomass WormPaths
PEAPathway Enrichment Analysis
WormClustClustering- and enrichment-based association of genes with the metabolic network WPSWorm Perturb-Seq portal
Metabolite Overview
Abbreviation ..................................................... : pcollglys
Name ..................................................... : Procollagen L-lysine (to be modified)
Model ID ..................................................... : CC0143
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : Not available
Formula ..................................................... : XH
Charge ..................................................... : +1
Localization ..................................................... : Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : pcollglys
Other associations ..................................................... : See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space ..................................................... 		: Collagen biosynthesis (c)
Comments
  • Charge does not matter.

    • Reactions
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.     		Pathway
    RC03376Name: Protein lysine,2-oxoglutarate:oxygen oxidoreductase (5-hydroxylating)
    Type: Regular
    Location: Cytosol
    KEGG ID: R03376

    click to see details on this item
    1.14.11.4Name: procollagen-lysine 5-dioxygenase
    Other names: lysine hydroxylase, lysine,2-oxoglutarate 5-dioxygenase, protocollagen lysine dioxygenase, collagen lysine hydroxylase, lysine-2-oxoglutarate dioxygenase, lysyl hydroxylase, lysylprotocollagen dioxygenase, protocollagen lysyl hydroxylase, peptidyl-lysine, 2-oxoglutarate: oxygen oxidoreductase, peptidyllysine, 2-oxoglutarate:oxygen 5-oxidoreductase, protocollagen lysine hydroxylase, procollagen-L-lysine,2-oxoglutarate:oxygen oxidoreductase (5-hydroxylating)

    click to see details on this item
    [c] : akgName: 2-Oxoglutarate
    Formula: C5H4O5
    Charge: -2




    click to see details on this item     + o2Name: O2
    Formula: O2
    Charge: 0




    click to see details on this item     + pcollglysName: Procollagen L-lysine (to be modified)
    Formula: XH
    Charge: 1




    click to see details on this item
    co2Name: CO2
    Formula: CO2
    Charge: 0




    click to see details on this item     + pcollg5hlysName: Procollagen 5-hydroxy-L-lysine
    Formula: XHO
    Charge: 1




    click to see details on this item     + succName: Succinate
    Formula: C4H4O4
    Charge: -2




    click to see details on this item
    let-268
    Collagen biosynthesis
    RCC0170Name: Procollagen synthesis (unmodified protein)
    Type: Regular
    Location: Cytosol
    KEGG ID: NA

    click to see details on this item
    Not applicable
    [c] : (2.0) gtpName: GTP
    Formula: C10H12N5O14P3
    Charge: -4




    click to see details on this item     + (0.324) atpName: ATP
    Formula: C10H12N5O13P3
    Charge: -4




    click to see details on this item     + (2.324) h2oName: H2O
    Formula: H2O
    Charge: 0




    click to see details on this item     + (0.072072) alatrnaName: L-Alanyl-tRNA(Ala)
    Formula: C3H7NO2R
    Charge: 1




    click to see details on this item     + (0.048116) argtrnaName: L-Arginyl-tRNA(Arg)
    Formula: C6H15N4O2R
    Charge: 2




    click to see details on this item     + (0.033015) asntrnaName: L-Asparaginyl-tRNA(Asn)
    Formula: C4H8N2O3R
    Charge: 1




    click to see details on this item     + (0.049284) asptrnaName: L-Aspartyl-tRNA(Asp)
    Formula: C4H6NO4R
    Charge: 0




    click to see details on this item     + (0.027047) cystrnaName: L-Cysteinyl-tRNA(Cys)
    Formula: C3H7NO2SR
    Charge: 1




    click to see details on this item     + (0.049537) glutrnaName: L-Glutamyl-tRNA(Glu)
    Formula: C5H8NO4R
    Charge: 0




    click to see details on this item     + (0.046288) glntrnaName: L-Glutaminyl-tRNA(Gln)
    Formula: C5H10N2O3R
    Charge: 1




    click to see details on this item     + (0.195952) glytrnaName: Glycyl-tRNA(Gly)
    Formula: C2H5NO2R
    Charge: 1




    click to see details on this item     + (0.014203) histrnaName: L-Histidyl-tRNA(His)
    Formula: C6H9N3O2R
    Charge: 1




    click to see details on this item     + (0.027694) iletrnaName: L-Isoleucyl-tRNA(Ile)
    Formula: C6H13NO2R
    Charge: 1




    click to see details on this item     + (0.033232) leutrnaName: L-Leucyl-tRNA(Leu)
    Formula: C6H13NO2R
    Charge: 1




    click to see details on this item     + (0.036365) lystrnaName: L-Lysine-tRNA (Lys)
    Formula: C6H15N2O2R
    Charge: 2




    click to see details on this item     + (0.017249) mettrnaName: L-Methionyl-tRNA (Met)
    Formula: C5H11NO2SR
    Charge: 1




    click to see details on this item     + (0.017276) phetrnaName: L-Phenylalanyl-tRNA(Phe)
    Formula: C9H11NO2R
    Charge: 1




    click to see details on this item     + (0.167533) protrnaName: L-Prolyl-tRNA(Pro)
    Formula: C5H9NO2R
    Charge: 1




    click to see details on this item     + (0.051072) sertrnaName: L-Seryl-tRNA(Ser)
    Formula: C3H7NO3R
    Charge: 1




    click to see details on this item     + (0.042924) thrtrnaName: L-Threonyl-tRNA(Thr)
    Formula: C4H9NO3R
    Charge: 1




    click to see details on this item     + (0.004785) trptrnaName: L-Tryptophanyl-tRNA(Trp)
    Formula: C11H12N2O2R
    Charge: 1




    click to see details on this item     + (0.022921) tyrtrnaName: L-Tyrosyl-tRNA(Tyr)
    Formula: C9H11NO3R
    Charge: 1




    click to see details on this item     + (0.043435) valtrnaName: L-Valyl-tRNA(Val)
    Formula: C5H11NO2R
    Charge: 1




    click to see details on this item
    (0.921682) pcollg_restName: Procollagen (unmodified portion)
    Formula: X
    Charge: 0




    click to see details on this item     + (0.006239) pcollglysName: Procollagen L-lysine (to be modified)
    Formula: XH
    Charge: 1




    click to see details on this item     + (0.072079) pcollgproName: Procollagen L-proline (to be modified)
    Formula: XH
    Charge: 0




    click to see details on this item     + (2.0) gdpName: GDP
    Formula: C10H12N5O11P2
    Charge: -3




    click to see details on this item     + (0.324) adpName: ADP
    Formula: C10H12N5O10P2
    Charge: -3




    click to see details on this item     + (3.324) hName: H+
    Formula: H
    Charge: 1




    click to see details on this item     + (2.324) piName: Phosphate
    Formula: HO4P
    Charge: -2




    click to see details on this item     + (0.072072) trnaalaName: tRNA(Ala)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.048116) trnaargName: tRNA(Arg)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.033015) trnaasnName: tRNA(Asn)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.049284) trnaaspName: tRNA(Asp)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.027047) trnacysName: tRNA(Cys)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.049537) trnagluName: tRNA (Glu)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.046288) trnaglnName: tRNA(Gln)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.195952) trnaglyName: tRNA(Gly)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.014203) trnahisName: tRNA(His)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.027694) trnaileName: tRNA(Ile)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.033232) trnaleuName: tRNA(Leu)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.036365) trnalysName: tRNA(Lys)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.017249) trnametName: tRNA(Met)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.017276) trnapheName: tRNA(Phe)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.167533) trnaproName: tRNA(Pro)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.051072) trnaserName: tRNA(Ser)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.042924) trnathrName: tRNA(Thr)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.004785) trnatrpName: tRNA(Trp)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.022921) trnatyrName: tRNA(Tyr)
    Formula: ROH
    Charge: 0




    click to see details on this item     + (0.043435) trnavalName: tRNA(Val)
    Formula: ROH
    Charge: 0




    click to see details on this item
    Not applicable
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