HOME DOWNLOAD CITATION HELP
Umass Logo PSB Logo
(?) Enter a search word or phrase (left box), optionally select an appropriate field (middle), and hit the search button or press enter. This search engine is NOT case sensitive.

Use wild characters " ? " and " * " for efficient search:
  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
PEAPathway Enrichment Analysis
WormClustClustering- and enrichment-based association of genes with the metabolic network WPSWorm Perturb-Seq portal
Metabolite Overview
Abbreviation ..................................................... : psduri
Name ..................................................... : Pseudouridine
Model ID ..................................................... : C02067
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : C02067
Formula ..................................................... : C9H12N2O6
Charge ..................................................... : 0
Localization ..................................................... : Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : Not available
Other associations ..................................................... : See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space ..................................................... 		: Pyrimidine metabolism (c)
Comments
  • Charge based on DBET, which is accurate for psd5p, a similar compound taking place in the same reaction.

    • Reactions
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.     		Pathway
    RC03315Name: ATP:pseudouridine 5'-phosphotransferase; pseudouridine kinase
    Type: Regular
    Location: Cytosol
    KEGG ID: R03315

    click to see details on this item
    2.7.1.83Name: pseudouridine kinase
    Other names: pseudouridine kinase (phosphorylating)

    click to see details on this item
    [c] : atpName: ATP
    Formula: C10H12N5O13P3
    Charge: -4




    click to see details on this item     + psduriName: Pseudouridine
    Formula: C9H12N2O6
    Charge: 0




    click to see details on this item
    adpName: ADP
    Formula: C10H12N5O10P2
    Charge: -3




    click to see details on this item     + psd5pName: Pseudouridine 5'-phosphate
    Formula: C9H11N2O9P
    Charge: -2




    click to see details on this item     + hName: H+
    Formula: H
    Charge: 1




    click to see details on this item
    T24C12.3
    Pyrimidine metabolism
    RC03020Name: pseudouridine synthase
    Type: Regular
    Location: Cytosol
    KEGG ID: R03020

    click to see details on this item
    5.4.99.12Name: tRNA pseudouridine38-40 synthase
    Other names: TruA, tRNA pseudouridine synthase I, PSUI, hisT (gene name)

    click to see details on this item
    [c] : uriName: Uridine
    Formula: C9H12N2O6
    Charge: 0




    click to see details on this item
    psduriName: Pseudouridine
    Formula: C9H12N2O6
    Charge: 0




    click to see details on this item
    Y73B6BL.29 | pus-1
    Pyrimidine metabolism
    The information and tools provided in this website are to be used for academic purposes only.