WormFlux: mechanistic analysis of C. elegans metabolism

HOME DOWNLOAD CITATION HELP

(?) Enter a search word or phrase (left box), optionally select an appropriate field (middle), and hit the search button or press enter. This search engine is NOT case sensitive.

Use wild characters " ? " and " * " for efficient search:

? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network WPSWorm Perturb-Seq portal

Metabolite Overview

Abbreviation .....................................................	:	glyclt
Name .....................................................	:	Glycolate, etc.Glycolic acid, Hydroxyacetic acid
Model ID .....................................................	:	C00160
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C00160
Formula .....................................................	:	C2H3O3
Charge .....................................................	:	-1
Localization .....................................................	:	Cytosol, Extracellular
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	glyclt
Other associations .....................................................	:	See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Glyoxylate and dicarboxylate metabolism (c)

iCEL1314

Comments

ERROR

Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC00475Name: Glycolate:oxygen 2-oxidoreductase Type: Regular Location: Cytosol KEGG ID: R00475 click to see details on this item	1.1.3.15Name: (S)-2-hydroxy-acid oxidase Other names: hydroxy-acid oxidase A, hydroxy-acid oxidase B, glycolate oxidase, L-2-hydroxy acid oxidase, hydroxyacid oxidase A, L-alpha-hydroxy acid oxidase click to see details on this item	[c] : glycltName: Glycolate Formula: C2H3O3 Charge: -1 click to see details on this item + o2Name: O2 Formula: O2 Charge: 0 click to see details on this item		glxName: Glyoxylate Formula: C2H1O3 Charge: -1 click to see details on this item + h2o2Name: Hydrogen peroxide Formula: H2O2 Charge: 0 click to see details on this item	F41E6.5	Glyoxylate and dicarboxylate metabolism
RC01334Name: phosphoglycolate phosphatase Type: Regular Location: Cytosol KEGG ID: R01334 click to see details on this item	3.1.3.18Name: phosphoglycolate phosphatase Other names: phosphoglycolate hydrolase, 2-phosphoglycolate phosphatase, P-glycolate phosphatase, phosphoglycollate phosphatase click to see details on this item	[c] : 2pglycName: 2-Phosphoglycolate Formula: C2H2O6P Charge: -3 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item		glycltName: Glycolate Formula: C2H3O3 Charge: -1 click to see details on this item + piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item	C53A3.2 \| F44E7.2 \| K09H11.7	Glyoxylate and dicarboxylate metabolism
TCE5045Name: glycolate transport via proton symport, reversible Type: Transport Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	glycltName: Glycolate Formula: C2H3O3 Charge: -1 click to see details on this item[e]		glycltName: Glycolate Formula: C2H3O3 Charge: -1 click to see details on this item[c]	Not determined	Transport
EX00160Name: Glycolate exchange Type: Exchange Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	glycltName: Glycolate Formula: C2H3O3 Charge: -1 click to see details on this item[e]			Not applicable	Exchange with the environment

The information and tools provided in this website are to be used for academic purposes only.