WormFlux: mechanistic analysis of C. elegans metabolism

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Use wild characters " ? " and " * " for efficient search:

? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network WPSWorm Perturb-Seq portal

Metabolite Overview

Abbreviation .....................................................	:	ala-D
Name .....................................................	:	D-Alanine, etc.D-2-Aminopropionic acid, D-Ala
Model ID .....................................................	:	C00133
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C00133
Formula .....................................................	:	C3H7NO2
Charge .....................................................	:	0
Localization .....................................................	:	Cytosol, Extracellular
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	ala-D
Other associations .....................................................	:	See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Not yet represented in WormPaths maps.

iCEL1314

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Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC05861Name: D-alanine:oxygen oxidoreductase (deaminating) Type: Regular Location: Cytosol KEGG ID: R05861 click to see details on this item	1.4.3.3Name: D-amino-acid oxidase Other names: ophio-amino-acid oxidase, L-amino acid:O2 oxidoreductase, new yellow enzyme click to see details on this item	[c] : ala-DName: D-Alanine Formula: C3H7NO2 Charge: 0 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + o2Name: O2 Formula: O2 Charge: 0 click to see details on this item		h2o2Name: Hydrogen peroxide Formula: H2O2 Charge: 0 click to see details on this item + nh4Name: Ammonium Formula: H4N Charge: 1 click to see details on this item + pyrName: Pyruvate Formula: C3H3O3 Charge: -1 click to see details on this item	daao-1	Miscellaneous
TCE0797Name: D-Alanine transport Type: Transport Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	ala-DName: D-Alanine Formula: C3H7NO2 Charge: 0 click to see details on this item[e]		ala-DName: D-Alanine Formula: C3H7NO2 Charge: 0 click to see details on this item[c]	Not determined	Transport
EX00133Name: D-Alanine exchange Type: Exchange Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	ala-DName: D-Alanine Formula: C3H7NO2 Charge: 0 click to see details on this item[e]			Not applicable	Exchange with the environment

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