WormFlux: mechanistic analysis of C. elegans metabolism

Metabolite Overview

Abbreviation .....................................................	:	gdp
Name .....................................................	:	GDP, etc.Guanosine 5'-diphosphate, Guanosine diphosphate
Model ID .....................................................	:	C00035
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C00035
Formula .....................................................	:	C10H12N5O11P2
Charge .....................................................	:	-3
Localization .....................................................	:	Mitochondria, Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	gdp
Other associations .....................................................	:	See reaction table below (21 reactions in total)

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Go to map

iCEL1314

Comments

ERROR

Reactions

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RM00432Name: Succinate:CoA ligase (GDP-forming) Type: Regular Location: Mitochondria KEGG ID: R00432 click to see details on this item	6.2.1.4Name: succinate---CoA ligase (GDP-forming) Other names: succinyl-CoA synthetase (GDP-forming), succinyl coenzyme A synthetase (guanosine diphosphate-forming), succinate thiokinase, succinic thiokinase, succinyl coenzyme A synthetase, succinate-phosphorylating enzyme, P-enzyme, SCS, G-STK, succinyl coenzyme A synthetase (GDP-forming), succinyl CoA synthetase, succinyl coenzyme A synthetase click to see details on this item	[m] : gtpName: GTP Formula: C10H12N5O14P3 Charge: -4 click to see details on this item + succName: Succinate Formula: C4H4O4 Charge: -2 click to see details on this item + coaName: Coenzyme A Formula: C21H32N7O16P3S Charge: -4 click to see details on this item	gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item + succoaName: Succinyl-CoA Formula: C25H35N7O19P3S Charge: -5 click to see details on this item	(sucl-1 \| sucl-2) & sucg-1	TCA cycle
RCC0170Name: Procollagen synthesis (unmodified protein) Type: Regular Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : (2.0) gtpName: GTP Formula: C10H12N5O14P3 Charge: -4 click to see details on this item + (0.324) atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + (2.324) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + (0.072072) alatrnaName: L-Alanyl-tRNA(Ala) Formula: C3H7NO2R Charge: 1 click to see details on this item + (0.048116) argtrnaName: L-Arginyl-tRNA(Arg) Formula: C6H15N4O2R Charge: 2 click to see details on this item + (0.033015) asntrnaName: L-Asparaginyl-tRNA(Asn) Formula: C4H8N2O3R Charge: 1 click to see details on this item + (0.049284) asptrnaName: L-Aspartyl-tRNA(Asp) Formula: C4H6NO4R Charge: 0 click to see details on this item + (0.027047) cystrnaName: L-Cysteinyl-tRNA(Cys) Formula: C3H7NO2SR Charge: 1 click to see details on this item + (0.049537) glutrnaName: L-Glutamyl-tRNA(Glu) Formula: C5H8NO4R Charge: 0 click to see details on this item + (0.046288) glntrnaName: L-Glutaminyl-tRNA(Gln) Formula: C5H10N2O3R Charge: 1 click to see details on this item + (0.195952) glytrnaName: Glycyl-tRNA(Gly) Formula: C2H5NO2R Charge: 1 click to see details on this item + (0.014203) histrnaName: L-Histidyl-tRNA(His) Formula: C6H9N3O2R Charge: 1 click to see details on this item + (0.027694) iletrnaName: L-Isoleucyl-tRNA(Ile) Formula: C6H13NO2R Charge: 1 click to see details on this item + (0.033232) leutrnaName: L-Leucyl-tRNA(Leu) Formula: C6H13NO2R Charge: 1 click to see details on this item + (0.036365) lystrnaName: L-Lysine-tRNA (Lys) Formula: C6H15N2O2R Charge: 2 click to see details on this item + (0.017249) mettrnaName: L-Methionyl-tRNA (Met) Formula: C5H11NO2SR Charge: 1 click to see details on this item + (0.017276) phetrnaName: L-Phenylalanyl-tRNA(Phe) Formula: C9H11NO2R Charge: 1 click to see details on this item + (0.167533) protrnaName: L-Prolyl-tRNA(Pro) Formula: C5H9NO2R Charge: 1 click to see details on this item + (0.051072) sertrnaName: L-Seryl-tRNA(Ser) Formula: C3H7NO3R Charge: 1 click to see details on this item + (0.042924) thrtrnaName: L-Threonyl-tRNA(Thr) Formula: C4H9NO3R Charge: 1 click to see details on this item + (0.004785) trptrnaName: L-Tryptophanyl-tRNA(Trp) Formula: C11H12N2O2R Charge: 1 click to see details on this item + (0.022921) tyrtrnaName: L-Tyrosyl-tRNA(Tyr) Formula: C9H11NO3R Charge: 1 click to see details on this item + (0.043435) valtrnaName: L-Valyl-tRNA(Val) Formula: C5H11NO2R Charge: 1 click to see details on this item	(0.921682) pcollg_restName: Procollagen (unmodified portion) Formula: X Charge: 0 click to see details on this item + (0.006239) pcollglysName: Procollagen L-lysine (to be modified) Formula: XH Charge: 1 click to see details on this item + (0.072079) pcollgproName: Procollagen L-proline (to be modified) Formula: XH Charge: 0 click to see details on this item + (2.0) gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + (0.324) adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + (3.324) hName: H+ Formula: H Charge: 1 click to see details on this item + (2.324) piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item + (0.072072) trnaalaName: tRNA(Ala) Formula: ROH Charge: 0 click to see details on this item + (0.048116) trnaargName: tRNA(Arg) Formula: ROH Charge: 0 click to see details on this item + (0.033015) trnaasnName: tRNA(Asn) Formula: ROH Charge: 0 click to see details on this item + (0.049284) trnaaspName: tRNA(Asp) Formula: ROH Charge: 0 click to see details on this item + (0.027047) trnacysName: tRNA(Cys) Formula: ROH Charge: 0 click to see details on this item + (0.049537) trnagluName: tRNA (Glu) Formula: ROH Charge: 0 click to see details on this item + (0.046288) trnaglnName: tRNA(Gln) Formula: ROH Charge: 0 click to see details on this item + (0.195952) trnaglyName: tRNA(Gly) Formula: ROH Charge: 0 click to see details on this item + (0.014203) trnahisName: tRNA(His) Formula: ROH Charge: 0 click to see details on this item + (0.027694) trnaileName: tRNA(Ile) Formula: ROH Charge: 0 click to see details on this item + (0.033232) trnaleuName: tRNA(Leu) Formula: ROH Charge: 0 click to see details on this item + (0.036365) trnalysName: tRNA(Lys) Formula: ROH Charge: 0 click to see details on this item + (0.017249) trnametName: tRNA(Met) Formula: ROH Charge: 0 click to see details on this item + (0.017276) trnapheName: tRNA(Phe) Formula: ROH Charge: 0 click to see details on this item + (0.167533) trnaproName: tRNA(Pro) Formula: ROH Charge: 0 click to see details on this item + (0.051072) trnaserName: tRNA(Ser) Formula: ROH Charge: 0 click to see details on this item + (0.042924) trnathrName: tRNA(Thr) Formula: ROH Charge: 0 click to see details on this item + (0.004785) trnatrpName: tRNA(Trp) Formula: ROH Charge: 0 click to see details on this item + (0.022921) trnatyrName: tRNA(Tyr) Formula: ROH Charge: 0 click to see details on this item + (0.043435) trnavalName: tRNA(Val) Formula: ROH Charge: 0 click to see details on this item	Not applicable	Miscellaneous
RC09752Name: GDP:alpha-D-glucose 1-phosphate guanylyltransferase Type: Regular Location: Cytosol KEGG ID: R09752 click to see details on this item	2.7.7.78Name: GDP-D-glucose phosphorylase click to see details on this item	[c] : gdpgName: GDP-D-glucose Formula: C16H23N5O16P2 Charge: -2 click to see details on this item + piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item	g1pName: D-Glucose 1-phosphate Formula: C6H11O9P Charge: -2 click to see details on this item + gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item	mcp-1	Fructose and mannose metabolism
RC00431Name: GTP:oxaloacetate carboxy-lyase (adding GTP, phosphoenolpyruvate-forming) Type: Regular Location: Cytosol KEGG ID: R00431 click to see details on this item	4.1.1.32Name: phosphoenolpyruvate carboxykinase (GTP) Other names: phosphoenolpyruvate carboxylase, phosphopyruvate carboxylase, phosphopyruvate (guanosine triphosphate) carboxykinase, phosphoenolpyruvic carboxykinase (GTP), phosphopyruvate carboxylase (GTP), phosphoenolpyruvic carboxylase (GTP), phosphoenolpyruvic carboxykinase, phosphoenolpyruvate carboxykinase, PEP carboxylase, GTP:oxaloacetate carboxy-lyase (transphosphorylating) click to see details on this item	[c] : gtpName: GTP Formula: C10H12N5O14P3 Charge: -4 click to see details on this item + oaaName: Oxaloacetate Formula: C4H2O5 Charge: -2 click to see details on this item	gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + pepName: Phosphoenolpyruvate Formula: C3H2O6P Charge: -3 click to see details on this item + co2Name: CO2 Formula: CO2 Charge: 0 click to see details on this item	pck-1 \| pck-2 \| pck-3	Glycolysis / gluconeogenesis
RC05972Name: chitobiosyldiphosphodolichol beta-mannosyltransferase Type: Regular Location: Cytosol KEGG ID: R05972 click to see details on this item	2.4.1.142Name: chitobiosyldiphosphodolichol beta-mannosyltransferase Other names: guanosine diphosphomannose-dolichol diphosphochitobiose mannosyltransferase, GDP-mannose-dolichol diphosphochitobiose mannosyltransferase click to see details on this item	[c] : chito2pdolName: N,N'-Diacetylchitobiosyldiphosphodolichol Formula: C126H206N2O17P2 Charge: -2 click to see details on this item + gdpmannName: GDP-D-mannose Formula: C16H23N5O16P2 Charge: -2 click to see details on this item	gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item + mpdolName: beta-D-Mannosyldiacetylchitobiosyldiphosphodolichol Formula: C132H216N2O22P2 Charge: -2 click to see details on this item	algn-1	N-Glycan biosynthesis
RC05973Name: GDP-mannose:glycolipid 3-alpha-D-mannosyltransferase Type: Regular Location: Cytosol KEGG ID: R05973 click to see details on this item	2.4.1.132Name: GDP-Man:Man1GlcNAc2-PP-dolichol alpha-1,3-mannosyltransferase Other names: Alg2 mannosyltransferase (ambiguous), ALG2 (gene name, ambiguous), glycolipid 3-alpha-mannosyltransferase, GDP-mannose:glycolipid 3-alpha-D-mannosyltransferase, GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase click to see details on this item	[c] : gdpmannName: GDP-D-mannose Formula: C16H23N5O16P2 Charge: -2 click to see details on this item + mpdolName: beta-D-Mannosyldiacetylchitobiosyldiphosphodolichol Formula: C132H216N2O22P2 Charge: -2 click to see details on this item	gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item + m1mpdolName: alpha-D-mannosyl-beta-D-mannosyl-diacylchitobiosyldiphosphodolichol Formula: C138H226N2O27P2 Charge: -2 click to see details on this item	algn-2	N-Glycan biosynthesis
RC06238Name: GDP-D-mannose:D-Man-alpha-(1->3)-D-Man-beta-(1->4)-D-GlcNAc-beta-(1->4)-D-GlcNAc-diphosphodolichol alpha-6-mannosyltransferase Type: Regular Location: Cytosol KEGG ID: R06238 click to see details on this item	2.4.1.257Name: GDP-Man:Man2GlcNAc2-PP-dolichol alpha-1,6-mannosyltransferase Other names: GDP-Man:Man2GlcNAc2-PP-Dol alpha-1,6-mannosyltransferase, Alg2 mannosyltransferase (ambiguous), ALG2 (gene name, ambiguous), GDP-Man:Man1GlcNAc2-PP-dolichol mannosyltransferase (ambiguous) click to see details on this item	[c] : gdpmannName: GDP-D-mannose Formula: C16H23N5O16P2 Charge: -2 click to see details on this item + m1mpdolName: alpha-D-mannosyl-beta-D-mannosyl-diacylchitobiosyldiphosphodolichol Formula: C138H226N2O27P2 Charge: -2 click to see details on this item	gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item + m2mpdolName: (alpha-D-mannosyl)2-beta-D-mannosyl-diacetylchitobiosyldiphosphodolichol Formula: C144H236N2O32P2 Charge: -2 click to see details on this item	algn-2	N-Glycan biosynthesis
RCC0037Name: GDP-mannose:glycolipid 1,2-alpha-D-mannosyltransferase; GDP-mannose:glycolipid 1,2-alpha-D-mannosyltransferase Type: Regular Location: Cytosol KEGG ID: R06127;R06128 click to see details on this item	2.4.1.131Name: GDP-Man:Man3GlcNAc2-PP-dolichol alpha-1,2-mannosyltransferase Other names: ALG11, ALG11 mannosyltransferase, LEW3 (gene name), At2G40190 (gene name), gmd3 (gene name), galactomannan deficiency protein 3, GDP-mannose:glycolipid 1,2-alpha-D-mannosyltransferase, glycolipid 2-alpha-mannosyltransferase, GDP-mannose:glycolipid 2-alpha-D-mannosyltransferase, GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase click to see details on this item	[c] : (2) gdpmannName: GDP-D-mannose Formula: C16H23N5O16P2 Charge: -2 click to see details on this item + m2mpdolName: (alpha-D-mannosyl)2-beta-D-mannosyl-diacetylchitobiosyldiphosphodolichol Formula: C144H236N2O32P2 Charge: -2 click to see details on this item	(2) gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + (2) hName: H+ Formula: H Charge: 1 click to see details on this item + m4mpdolName: (alpha-D-Mannosyl)4-beta-D-mannosyl-diacetylchitobiosyldiphosphodolichol Formula: C156H256N2O42P2 Charge: -2 click to see details on this item	algn-11	N-Glycan biosynthesis
RC01009Name: GDPmannose:dolichyl-phosphate O-beta-D-mannosyltransferase Type: Regular Location: Cytosol KEGG ID: R01009 click to see details on this item	2.4.1.83Name: dolichyl-phosphate beta-D-mannosyltransferase Other names: GDP-Man:DolP mannosyltransferase, dolichyl mannosyl phosphate synthase, dolichyl-phospho-mannose synthase, GDP-mannose:dolichyl-phosphate mannosyltransferase, guanosine diphosphomannose-dolichol phosphate mannosyltransferase, dolichol phosphate mannose synthase, dolichyl phosphate mannosyltransferase, dolichyl-phosphate mannose synthase, GDP-mannose-dolichol phosphate mannosyltransferase, GDP-mannose-dolichylmonophosphate mannosyltransferase, mannosylphosphodolichol synthase, mannosylphosphoryldolichol synthase click to see details on this item	[c] : dolpName: Dolichol phosphate Formula: C110H179O4P Charge: -2 click to see details on this item + gdpmannName: GDP-D-mannose Formula: C16H23N5O16P2 Charge: -2 click to see details on this item	dolmanpName: Dolichyl phosphate D-mannose Formula: C116H190O9P Charge: -1 click to see details on this item + gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item	dpm-1 \| dpm-3	N-Glycan biosynthesis
RC05988Name: glycoprotein 6-alpha-L-fucosyltransferase (acting on n2m2masn) Type: Regular Location: Cytosol KEGG ID: R05988 click to see details on this item	2.4.1.68Name: glycoprotein 6-alpha-L-fucosyltransferase Other names: GDP-fucose---glycoprotein fucosyltransferase, GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha1->6fucosyltransferase, GDP-L-fucose-glycoprotein fucosyltransferase, glycoprotein fucosyltransferase, guanosine diphosphofucose-glycoprotein fucosyltransferase, GDP-L-fucose:glycoprotein (L-fucose to asparagine-linked N-acetylglucosamine of 4-N-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl}asparagine) 6-alpha-L-fucosyltransferase, FucT, GDP-L-fucose:glycoprotein (L-fucose to asparagine-linked N-acetylglucosamine of N4-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl}asparagine) 6-alpha-L-fucosyltransferase click to see details on this item	[c] : gdpfucName: GDP-L-fucose Formula: C16H23N5O15P2 Charge: -2 click to see details on this item + n2m2masnName: ((N-acetyl-D-glucosaminyl)2-(alpha-D-mannosyl)2-beta-D-mannosyl-diacetylchitobiosyl)-L-asparagine (protein) Formula: C50H83N4O35X Charge: 0 click to see details on this item	fn2m2masnName: N4-{N-Acetyl-beta-D-glucosaminyl-(1,2)-alpha-D-mannosyl-(1,3)-[N-acetyl-beta-D-glucosaminyl-(1,2)-alpha-D-mannosyl-(1,6)]-beta-D-mannosyl-(1,4)-N-acetyl-beta-D-glucosaminyl-(1,4)-[alpha-L-fucosyl-(1,6)]-N-acetyl-beta-D-glucosaminyl}asparagine Formula: C56H93N4O39X Charge: 0 click to see details on this item + gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item	fut-8	N-Glycan biosynthesis
RC09319Name: glycoprotein 6-alpha-L-fucosyltransferase (acting on nm2masn) Type: Regular Location: Cytosol KEGG ID: R09319 click to see details on this item	2.4.1.68Name: glycoprotein 6-alpha-L-fucosyltransferase Other names: GDP-fucose---glycoprotein fucosyltransferase, GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha1->6fucosyltransferase, GDP-L-fucose-glycoprotein fucosyltransferase, glycoprotein fucosyltransferase, guanosine diphosphofucose-glycoprotein fucosyltransferase, GDP-L-fucose:glycoprotein (L-fucose to asparagine-linked N-acetylglucosamine of 4-N-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl}asparagine) 6-alpha-L-fucosyltransferase, FucT, GDP-L-fucose:glycoprotein (L-fucose to asparagine-linked N-acetylglucosamine of N4-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl}asparagine) 6-alpha-L-fucosyltransferase click to see details on this item	[c] : gdpfucName: GDP-L-fucose Formula: C16H23N5O15P2 Charge: -2 click to see details on this item + nm2masnName: (N-acetyl-D-glucosaminyl-(alpha-D-mannosyl)2-beta-D-mannosyl-diacetylchitobiosyl)-L-asparagine (protein) Formula: C42H70N3O30X Charge: 0 click to see details on this item	fnm2masnName: MGnFuc Formula: C48H80N3O34X Charge: 0 click to see details on this item + gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item	fut-8	N-Glycan biosynthesis
RC01135Name: IMP:L-aspartate ligase (GDP-forming) Type: Regular Location: Cytosol KEGG ID: R01135 click to see details on this item	6.3.4.4Name: adenylosuccinate synthase Other names: IMP---aspartate ligase, adenylosuccinate synthetase, succinoadenylic kinosynthetase, succino-AMP synthetase click to see details on this item	[c] : asp-LName: L-Aspartate Formula: C4H6NO4 Charge: -1 click to see details on this item + gtpName: GTP Formula: C10H12N5O14P3 Charge: -4 click to see details on this item + impName: IMP Formula: C10H11N4O8P Charge: -2 click to see details on this item	dcampName: "N6-(1,2-Dicarboxyethyl)-AMP" Formula: C14H14N5O11P Charge: -4 click to see details on this item + gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + (2) hName: H+ Formula: H Charge: 1 click to see details on this item + piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item	adss-1	Aspartate and asparagine metabolism
RC00332Name: ATP:GMP phosphotransferase Type: Regular Location: Cytosol KEGG ID: R00332 click to see details on this item	2.7.4.8Name: guanylate kinase Other names: deoxyguanylate kinase, 5'-GMP kinase, GMP kinase, guanosine monophosphate kinase, ATP:GMP phosphotransferase click to see details on this item	[c] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + gmpName: GMP Formula: C10H12N5O8P Charge: -2 click to see details on this item	adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item	guk-1	Purine metabolism
RC00328Name: GDP phosphohydrolase Type: Regular Location: Cytosol KEGG ID: R00328 click to see details on this item	3.6.1.6Name: nucleoside diphosphate phosphatase Other names: nucleoside-diphosphatase, thiaminpyrophosphatase, UDPase, inosine diphosphatase, adenosine diphosphatase, IDPase, ADPase, adenosinepyrophosphatase, guanosine diphosphatase, guanosine 5'-diphosphatase, inosine 5'-diphosphatase, uridine diphosphatase, uridine 5'-diphosphatase, type B nucleoside diphosphatase, GDPase, CDPase, nucleoside 5'-diphosphatase, type L nucleoside diphosphatase, NDPase, nucleoside diphosphate phosphohydrolase click to see details on this item	[c] : gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item	gmpName: GMP Formula: C10H12N5O8P Charge: -2 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item + piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item	(ZK563.7 \| apy-1) \| mig-23 \| uda-1	Purine metabolism
RC00330Name: ATP:GDP phosphotransferase Type: Regular Location: Cytosol KEGG ID: R00330 click to see details on this item	2.7.4.6Name: nucleoside-diphosphate kinase Other names: nucleoside 5'-diphosphate kinase, nucleoside diphosphate (UDP) kinase, nucleoside diphosphokinase, nucleotide phosphate kinase, UDP kinase, uridine diphosphate kinase click to see details on this item	[c] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item	adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + gtpName: GTP Formula: C10H12N5O14P3 Charge: -4 click to see details on this item	R05G6.5 \| Y48G8AL.15 \| ndk-1	Purine metabolism
RC02019Name: 2-Deoxyguanosine 5-diphosphate:oxidized-thioredoxin 2-oxidoreductase Type: Regular Location: Cytosol KEGG ID: R02019 click to see details on this item	1.17.4.1Name: ribonucleoside-diphosphate reductase Other names: ribonucleotide reductase, CDP reductase, ribonucleoside diphosphate reductase, UDP reductase, ADP reductase, nucleoside diphosphate reductase, ribonucleoside 5'-diphosphate reductase, ribonucleotide diphosphate reductase, 2'-deoxyribonucleoside-diphosphate:oxidized-thioredoxin 2'-oxidoreductase, RR click to see details on this item	[c] : gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + trdrdName: Reduced thioredoxin Formula: XH2 Charge: 0 click to see details on this item	dgdpName: dGDP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + trdoxName: Oxidized thioredoxin Formula: X Charge: 0 click to see details on this item	rnr-1 & rnr-2 & (F19G12.2 \| F58F9.1)	Purine metabolism
RC00335Name: GTP phosphohydrolase Type: Regular Location: Cytosol KEGG ID: R00335 click to see details on this item	3.6.5.5Name: dynamin GTPase click to see details on this item	[c] : gtpName: GTP Formula: C10H12N5O14P3 Charge: -4 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item	gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item + piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item	drp-1 \| dyn-1	Miscellaneous
RM00335Name: GTP phosphohydrolase Type: Regular Location: Mitochondria KEGG ID: R00335 click to see details on this item	3.6.5.5Name: dynamin GTPase click to see details on this item	[m] : gtpName: GTP Formula: C10H12N5O14P3 Charge: -4 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item	gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item + piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item	drp-1 \| eat-3	Miscellaneous
BIO0001Name: Protein synthesis (mitochondrial) Type: Biomass Location: Mitochondria KEGG ID: NA click to see details on this item	Not applicable	[m] : (2.0) gtpName: GTP Formula: C10H12N5O14P3 Charge: -4 click to see details on this item + (0.324) atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + (2.324) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + (0.111867) alatrnaName: L-Alanyl-tRNA(Ala) Formula: C3H7NO2R Charge: 1 click to see details on this item + (0.048846) argtrnaName: L-Arginyl-tRNA(Arg) Formula: C6H15N4O2R Charge: 2 click to see details on this item + (0.035405) asntrnaName: L-Asparaginyl-tRNA(Asn) Formula: C4H8N2O3R Charge: 1 click to see details on this item + (0.064946) asptrnaName: L-Aspartyl-tRNA(Asp) Formula: C4H6NO4R Charge: 0 click to see details on this item + (0.008665) cystrnaName: L-Cysteinyl-tRNA(Cys) Formula: C3H7NO2SR Charge: 1 click to see details on this item + (0.067386) glutrnaName: L-Glutamyl-tRNA(Glu) Formula: C5H8NO4R Charge: 0 click to see details on this item + (0.037694) glntrnaName: L-Glutaminyl-tRNA(Gln) Formula: C5H10N2O3R Charge: 1 click to see details on this item + (0.094618) glytrnaName: Glycyl-tRNA(Gly) Formula: C2H5NO2R Charge: 1 click to see details on this item + (0.01782) histrnaName: L-Histidyl-tRNA(His) Formula: C6H9N3O2R Charge: 1 click to see details on this item + (0.053231) iletrnaName: L-Isoleucyl-tRNA(Ile) Formula: C6H13NO2R Charge: 1 click to see details on this item + (0.082051) leutrnaName: L-Leucyl-tRNA(Leu) Formula: C6H13NO2R Charge: 1 click to see details on this item + (0.071622) lystrnaName: L-Lysine-tRNA (Lys) Formula: C6H15N2O2R Charge: 2 click to see details on this item + (0.020458) mettrnaName: L-Methionyl-tRNA (Met) Formula: C5H11NO2SR Charge: 1 click to see details on this item + (0.035592) phetrnaName: L-Phenylalanyl-tRNA(Phe) Formula: C9H11NO2R Charge: 1 click to see details on this item + (0.043238) protrnaName: L-Prolyl-tRNA(Pro) Formula: C5H9NO2R Charge: 1 click to see details on this item + (0.045815) sertrnaName: L-Seryl-tRNA(Ser) Formula: C3H7NO3R Charge: 1 click to see details on this item + (0.049868) thrtrnaName: L-Threonyl-tRNA(Thr) Formula: C4H9NO3R Charge: 1 click to see details on this item + (0.008944) trptrnaName: L-Tryptophanyl-tRNA(Trp) Formula: C11H12N2O2R Charge: 1 click to see details on this item + (0.026832) tyrtrnaName: L-Tyrosyl-tRNA(Tyr) Formula: C9H11NO3R Charge: 1 click to see details on this item + (0.075105) valtrnaName: L-Valyl-tRNA(Val) Formula: C5H11NO2R Charge: 1 click to see details on this item	prot_mitoName: Mitochondrial protein Formula: X Charge: 0 click to see details on this item + (2.0) gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + (0.324) adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + (3.324) hName: H+ Formula: H Charge: 1 click to see details on this item + (2.324) piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item + (0.111867) trnaalaName: tRNA(Ala) Formula: ROH Charge: 0 click to see details on this item + (0.048846) trnaargName: tRNA(Arg) Formula: ROH Charge: 0 click to see details on this item + (0.035405) trnaasnName: tRNA(Asn) Formula: ROH Charge: 0 click to see details on this item + (0.064946) trnaaspName: tRNA(Asp) Formula: ROH Charge: 0 click to see details on this item + (0.008665) trnacysName: tRNA(Cys) Formula: ROH Charge: 0 click to see details on this item + (0.067386) trnagluName: tRNA (Glu) Formula: ROH Charge: 0 click to see details on this item + (0.037694) trnaglnName: tRNA(Gln) Formula: ROH Charge: 0 click to see details on this item + (0.094618) trnaglyName: tRNA(Gly) Formula: ROH Charge: 0 click to see details on this item + (0.01782) trnahisName: tRNA(His) Formula: ROH Charge: 0 click to see details on this item + (0.053231) trnaileName: tRNA(Ile) Formula: ROH Charge: 0 click to see details on this item + (0.082051) trnaleuName: tRNA(Leu) Formula: ROH Charge: 0 click to see details on this item + (0.071622) trnalysName: tRNA(Lys) Formula: ROH Charge: 0 click to see details on this item + (0.020458) trnametName: tRNA(Met) Formula: ROH Charge: 0 click to see details on this item + (0.035592) trnapheName: tRNA(Phe) Formula: ROH Charge: 0 click to see details on this item + (0.043238) trnaproName: tRNA(Pro) Formula: ROH Charge: 0 click to see details on this item + (0.045815) trnaserName: tRNA(Ser) Formula: ROH Charge: 0 click to see details on this item + (0.049868) trnathrName: tRNA(Thr) Formula: ROH Charge: 0 click to see details on this item + (0.008944) trnatrpName: tRNA(Trp) Formula: ROH Charge: 0 click to see details on this item + (0.026832) trnatyrName: tRNA(Tyr) Formula: ROH Charge: 0 click to see details on this item + (0.075105) trnavalName: tRNA(Val) Formula: ROH Charge: 0 click to see details on this item	Not applicable	Biomass assembly
BIO0002Name: Protein synthesis (cytoplasmic) Type: Biomass Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : (2.0) gtpName: GTP Formula: C10H12N5O14P3 Charge: -4 click to see details on this item + (0.324) atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + (2.324) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + (0.12769) alatrnaName: L-Alanyl-tRNA(Ala) Formula: C3H7NO2R Charge: 1 click to see details on this item + (0.042387) argtrnaName: L-Arginyl-tRNA(Arg) Formula: C6H15N4O2R Charge: 2 click to see details on this item + (0.025739) asntrnaName: L-Asparaginyl-tRNA(Asn) Formula: C4H8N2O3R Charge: 1 click to see details on this item + (0.084822) asptrnaName: L-Aspartyl-tRNA(Asp) Formula: C4H6NO4R Charge: 0 click to see details on this item + (0.000208) cystrnaName: L-Cysteinyl-tRNA(Cys) Formula: C3H7NO2SR Charge: 1 click to see details on this item + (0.085568) glutrnaName: L-Glutamyl-tRNA(Glu) Formula: C5H8NO4R Charge: 0 click to see details on this item + (0.026184) glntrnaName: L-Glutaminyl-tRNA(Gln) Formula: C5H10N2O3R Charge: 1 click to see details on this item + (0.074691) glytrnaName: Glycyl-tRNA(Gly) Formula: C2H5NO2R Charge: 1 click to see details on this item + (0.017927) histrnaName: L-Histidyl-tRNA(His) Formula: C6H9N3O2R Charge: 1 click to see details on this item + (0.052143) iletrnaName: L-Isoleucyl-tRNA(Ile) Formula: C6H13NO2R Charge: 1 click to see details on this item + (0.079867) leutrnaName: L-Leucyl-tRNA(Leu) Formula: C6H13NO2R Charge: 1 click to see details on this item + (0.079083) lystrnaName: L-Lysine-tRNA (Lys) Formula: C6H15N2O2R Charge: 2 click to see details on this item + (0.012181) mettrnaName: L-Methionyl-tRNA (Met) Formula: C5H11NO2SR Charge: 1 click to see details on this item + (0.036544) phetrnaName: L-Phenylalanyl-tRNA(Phe) Formula: C9H11NO2R Charge: 1 click to see details on this item + (0.045145) protrnaName: L-Prolyl-tRNA(Pro) Formula: C5H9NO2R Charge: 1 click to see details on this item + (0.051284) sertrnaName: L-Seryl-tRNA(Ser) Formula: C3H7NO3R Charge: 1 click to see details on this item + (0.052305) thrtrnaName: L-Threonyl-tRNA(Thr) Formula: C4H9NO3R Charge: 1 click to see details on this item + (0.007259) trptrnaName: L-Tryptophanyl-tRNA(Trp) Formula: C11H12N2O2R Charge: 1 click to see details on this item + (0.027882) tyrtrnaName: L-Tyrosyl-tRNA(Tyr) Formula: C9H11NO3R Charge: 1 click to see details on this item + (0.071091) valtrnaName: L-Valyl-tRNA(Val) Formula: C5H11NO2R Charge: 1 click to see details on this item	prot_otherName: Non-mitochondrial protein Formula: X Charge: 0 click to see details on this item + (2.0) gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + (0.324) adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + (3.324) hName: H+ Formula: H Charge: 1 click to see details on this item + (2.324) piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item + (0.12769) trnaalaName: tRNA(Ala) Formula: ROH Charge: 0 click to see details on this item + (0.042387) trnaargName: tRNA(Arg) Formula: ROH Charge: 0 click to see details on this item + (0.025739) trnaasnName: tRNA(Asn) Formula: ROH Charge: 0 click to see details on this item + (0.084822) trnaaspName: tRNA(Asp) Formula: ROH Charge: 0 click to see details on this item + (0.000208) trnacysName: tRNA(Cys) Formula: ROH Charge: 0 click to see details on this item + (0.085568) trnagluName: tRNA (Glu) Formula: ROH Charge: 0 click to see details on this item + (0.026184) trnaglnName: tRNA(Gln) Formula: ROH Charge: 0 click to see details on this item + (0.074691) trnaglyName: tRNA(Gly) Formula: ROH Charge: 0 click to see details on this item + (0.017927) trnahisName: tRNA(His) Formula: ROH Charge: 0 click to see details on this item + (0.052143) trnaileName: tRNA(Ile) Formula: ROH Charge: 0 click to see details on this item + (0.079867) trnaleuName: tRNA(Leu) Formula: ROH Charge: 0 click to see details on this item + (0.079083) trnalysName: tRNA(Lys) Formula: ROH Charge: 0 click to see details on this item + (0.012181) trnametName: tRNA(Met) Formula: ROH Charge: 0 click to see details on this item + (0.036544) trnapheName: tRNA(Phe) Formula: ROH Charge: 0 click to see details on this item + (0.045145) trnaproName: tRNA(Pro) Formula: ROH Charge: 0 click to see details on this item + (0.051284) trnaserName: tRNA(Ser) Formula: ROH Charge: 0 click to see details on this item + (0.052305) trnathrName: tRNA(Thr) Formula: ROH Charge: 0 click to see details on this item + (0.007259) trnatrpName: tRNA(Trp) Formula: ROH Charge: 0 click to see details on this item + (0.027882) trnatyrName: tRNA(Tyr) Formula: ROH Charge: 0 click to see details on this item + (0.071091) trnavalName: tRNA(Val) Formula: ROH Charge: 0 click to see details on this item	Not applicable	Biomass assembly
DMN0073Name: Selenoprotein synthesis (single aminoacid) Type: Demand Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : (2.0) gtpName: GTP Formula: C10H12N5O14P3 Charge: -4 click to see details on this item + (0.324) atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + (2.324) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + sectrnaName: L-Selenocysteinyl-tRNA(Sec) Formula: C3H7NO2SeR Charge: 1 click to see details on this item	(2.0) gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + (0.324) adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + (3.324) hName: H+ Formula: H Charge: 1 click to see details on this item + (2.324) piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item + trnasecName: tRNA(Sec) Formula: ROH Charge: 0 click to see details on this item	trxr-1	Demand reactions

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